20 gStyle->SetOptStat(0000);
22 gStyle->SetPalette(1);
23 gROOT->SetStyle(
"Plain");
27 c1 =
new TCanvas (
"c1",
"",20,20,1200,900);
34 FILE *
fp = fopen(
"phantom.dat",
"r");
41 TH1F *
h1 =
new TH1F(
"h1",
"Nucleus marker intensity",100,1,300);
42 TH1F *
h11 =
new TH1F(
"h11 ",
"",100,1,300);
44 TH1F *
h2 =
new TH1F(
"h2",
"Cytoplasm marker intensity",100,1,300);
45 TH1F *
h20 =
new TH1F(
"h20 ",
"",100,1,300);
47 TNtuple *
ntupleYXN =
new TNtuple(
"NUCLEUS",
"ntuple",
"Y:X:vox");
48 TNtuple *
ntupleZX =
new TNtuple(
"CYTOPLASM",
"ntuple",
"Z:X:vox");
49 TNtuple *
ntupleYX =
new TNtuple(
"CYTOPLASM",
"ntuple",
"Y:X:vox");
56 if ( nlines == 0 ) ncols = fscanf(fp,
"%f %f %f",&tmp,&tmp,&tmp);
57 if ( nlines == 1 ) ncols = fscanf(fp,
"%f %f %f",&voxelSizeX,&voxelSizeY,&voxelSizeZ);
58 if ( nlines == 2 ) ncols = fscanf(fp,
"%f %f %f",&tmp,&tmp,&tmp);
59 if ( nlines >= 3 ) ncols = fscanf(fp,
"%f %f %f %f %f %f", &X, &Y, &Z, &
mat, &den, &vox);
68 if (den==1) h1->Fill( vox );
69 if (den==2) h11->Fill( vox );
70 ntupleYXN->Fill(Y,X,vox);
74 if (den==1) h2->Fill( vox );
75 if (den==2) h20->Fill( vox );
76 ntupleZX->Fill(Z,X,vox);
77 ntupleYX->Fill(Y,X,vox);
88 h1->GetXaxis()->SetLabelSize(0.025);
89 h1->GetYaxis()->SetLabelSize(0.025);
90 h1->GetXaxis()->SetTitleSize(0.035);
91 h1->GetYaxis()->SetTitleSize(0.035);
92 h1->GetXaxis()->SetTitleOffset(1.4);
93 h1->GetYaxis()->SetTitleOffset(1.4);
94 h1->GetXaxis()->SetTitle(
"Voxel intensity (0-255)");
95 h1->GetYaxis()->SetTitle(
"Number of events");
100 h11->SetFillColor(8);
107 h2->GetXaxis()->SetLabelSize(0.025);
108 h2->GetYaxis()->SetLabelSize(0.025);
109 h2->GetXaxis()->SetTitleSize(0.035);
110 h2->GetYaxis()->SetTitleSize(0.035);
111 h2->GetXaxis()->SetTitleOffset(1.4);
112 h2->GetYaxis()->SetTitleOffset(1.4);
113 h2->GetXaxis()->SetTitle(
"Voxel intensity (0-255)");
114 h2->GetYaxis()->SetTitle(
"Number of events");
118 h20->SetLineColor(5);
119 h20->SetFillColor(5);
126 gStyle->SetOptStat(0000);
128 gStyle->SetPalette(1);
129 gROOT->SetStyle(
"Plain");
134 TH2F *
hist =
new TH2F(
"hist",
"hist",50,-20,20,50,-20,20);
135 ntupleYX->Draw(
"Y:X>>hist",
"vox",
"colz");
138 hist->GetXaxis()->SetLabelSize(0.025);
139 hist->GetYaxis()->SetLabelSize(0.025);
140 hist->GetZaxis()->SetLabelSize(0.025);
141 hist->GetXaxis()->SetTitleSize(0.035);
142 hist->GetYaxis()->SetTitleSize(0.035);
143 hist->GetXaxis()->SetTitleOffset(1.4);
144 hist->GetYaxis()->SetTitleOffset(1.4);
145 hist->GetXaxis()->SetTitle(
"Y (um)");
146 hist->GetYaxis()->SetTitle(
"X (um)");
147 hist->SetTitle(
"Cytoplasm intensity on transverse section");
152 TH2F *
hist2 =
new TH2F(
"hist2",
"hist2",50,-20,20,50,-20,20);
153 ntupleYXN->Draw(
"Y:X>>hist2",
"vox",
"colz");
156 hist2->GetXaxis()->SetLabelSize(0.025);
157 hist2->GetYaxis()->SetLabelSize(0.025);
158 hist2->GetZaxis()->SetLabelSize(0.025);
159 hist2->GetXaxis()->SetTitleSize(0.035);
160 hist2->GetYaxis()->SetTitleSize(0.035);
161 hist2->GetXaxis()->SetTitleOffset(1.4);
162 hist2->GetYaxis()->SetTitleOffset(1.4);
163 hist2->GetXaxis()->SetTitle(
"Y (um)");
164 hist2->GetYaxis()->SetTitle(
"X (um)");
165 hist2->SetTitle(
"Nucleus intensity on transverse section");
169 system (
"rm -rf microbeam.root");
170 system (
"hadd -O microbeam.root microbeam_*.root");
172 TFile
f(
"microbeam.root");
180 ntuple0 = (TNtuple*)
f.Get(
"ntuple0");
181 ntuple1 = (TNtuple*)
f.Get(
"ntuple1");
182 ntuple2 = (TNtuple*)
f.Get(
"ntuple2");
183 ntuple3 = (TNtuple*)
f.Get(
"ntuple3");
184 ntuple4 = (TNtuple*)
f.Get(
"ntuple4");
186 TH1F *
h1bis =
new TH1F(
"h1bis",
"Dose distribution in Nucleus",100,0.001,1.);
187 TH1F *
h10 =
new TH1F(
"h10bis",
"Dose distribution in Cytoplasm",100,0.001,.2);
191 ntuple3->Project(
"h1bis",
"doseN");
192 scale = 1/h1bis->Integral();
195 h1bis->GetXaxis()->SetLabelSize(0.025);
196 h1bis->GetYaxis()->SetLabelSize(0.025);
197 h1bis->GetXaxis()->SetTitleSize(0.035);
198 h1bis->GetYaxis()->SetTitleSize(0.035);
199 h1bis->GetXaxis()->SetTitleOffset(1.4);
200 h1bis->GetYaxis()->SetTitleOffset(1.4);
201 h1bis->GetXaxis()->SetTitle(
"Absorbed dose (Gy)");
202 h1bis->GetYaxis()->SetTitle(
"Fraction of events");
203 h1bis->SetLineColor(3);
204 h1bis->SetFillColor(3);
211 ntuple3->Project(
"h10bis",
"doseC");
212 scale = 1/h10->Integral();
215 h10->GetXaxis()->SetLabelSize(0.025);
216 h10->GetYaxis()->SetLabelSize(0.025);
217 h10->GetXaxis()->SetTitleSize(0.035);
218 h10->GetYaxis()->SetTitleSize(0.035);
219 h10->GetXaxis()->SetTitleOffset(1.4);
220 h10->GetYaxis()->SetTitleOffset(1.4);
221 h10->GetXaxis()->SetTitle(
"Absorbed dose (Gy)");
222 h10->GetYaxis()->SetTitle(
"Fraction of events");
223 h10->SetLineColor(2);
224 h10->SetFillColor(2);
230 gStyle->SetOptStat(0000);
232 gStyle->SetPalette(1);
233 gROOT->SetStyle(
"Plain");
237 TH1F *
h2bis =
new TH1F(
"h2bis",
"Beam stopping power at cell entrance",200,0,300);
240 ntuple0->Project(
"h2bis",
"sp");
241 scale = 1/h2bis->Integral();
244 h2bis->GetXaxis()->SetLabelSize(0.025);
245 h2bis->GetYaxis()->SetLabelSize(0.025);
246 h2bis->GetXaxis()->SetTitleSize(0.035);
247 h2bis->GetYaxis()->SetTitleSize(0.035);
248 h2bis->GetXaxis()->SetTitleOffset(1.4);
249 h2bis->GetYaxis()->SetTitleOffset(1.4);
250 h2bis->GetXaxis()->SetTitle(
"dE/dx (keV/um)");
251 h2bis->GetYaxis()->SetTitle(
"Fraction of events");
252 h2bis->SetTitle(
"dE/dx at cell entrance");
253 h2bis->SetFillColor(4);
254 h2bis->SetLineColor(4);
256 gaus->SetLineColor(6);
266 Xc = -1295.59e3 - 955e3*sin(10*TMath::Pi()/180);
269 Zc = -1327e3 + 955e3*cos(10*TMath::Pi()/180);
272 Xc = Xc + 5.24*cos(10*TMath::Pi()/180);
273 Zc = Zc + 5.24*sin(10*TMath::Pi()/180);
275 TNtuple *
ntupleR =
new TNtuple(
"Rmax",
"ntuple",
"Z2:Y2:X2");
277 ntuple2->SetBranchAddress(
"x",&x);
278 ntuple2->SetBranchAddress(
"y",&y);
279 ntuple2->SetBranchAddress(
"z",&z);
283 ntuple2->GetEntry(i);
289 Z2 = zz*cos(10*TMath::Pi()/180)-xx*sin(10*TMath::Pi()/180);
290 X2 = zz*sin(10*TMath::Pi()/180)+xx*cos(10*TMath::Pi()/180);
292 ntupleR->Fill(Z2,Y2,X2);
296 ntupleR->Draw(
"X2:Z2",
"abs(X2)<50",
"surf3");
303 gStyle->SetOptStat(0000);
305 gStyle->SetPalette(1);
306 gROOT->SetStyle(
"Plain");
309 TH2F *
histbis =
new TH2F(
"histbis",
"histbis",50,-20,20,50,-20,20);
310 ntuple4->Draw(
"y*0.359060:x*0.359060>>histbis",
"doseV",
"contz");
312 histbis->Draw(
"contz");
313 histbis->GetXaxis()->SetLabelSize(0.025);
314 histbis->GetYaxis()->SetLabelSize(0.025);
315 histbis->GetZaxis()->SetLabelSize(0.025);
316 histbis->GetXaxis()->SetTitleSize(0.035);
317 histbis->GetYaxis()->SetTitleSize(0.035);
318 histbis->GetXaxis()->SetTitleOffset(1.4);
319 histbis->GetYaxis()->SetTitleOffset(1.4);
320 histbis->GetXaxis()->SetTitle(
"Y (um)");
321 histbis->GetYaxis()->SetTitle(
"X (um)");
322 histbis->SetTitle(
"Energy deposit -transverse- (z axis in eV)");
325 TH2F *
histter =
new TH2F(
"histter",
"histter",50,-20,20,50,-20,20);
326 ntuple4->Draw(
"x*0.359060:(z+1500/0.162810+21)*0.162810>>histter",
"doseV",
"contz");
328 histter->Draw(
"contz");
329 histter->GetXaxis()->SetLabelSize(0.025);
330 histter->GetYaxis()->SetLabelSize(0.025);
331 histter->GetZaxis()->SetLabelSize(0.025);
332 histter->GetXaxis()->SetTitleSize(0.035);
333 histter->GetYaxis()->SetTitleSize(0.035);
334 histter->GetXaxis()->SetTitleOffset(1.4);
335 histter->GetYaxis()->SetTitleOffset(1.4);
336 histter->GetXaxis()->SetTitle(
"Z (um)");
337 histter->GetYaxis()->SetTitle(
"X (um)");
338 histter->SetTitle(
"Energy deposit -longitudinal- (z axis in eV)");
344 gStyle->SetOptStat(0000);
346 gStyle->SetPalette(1);
347 gROOT->SetStyle(
"Plain");
349 TH1F *
h77 =
new TH1F(
"hx",
"h1",200,-10,10);
350 TH1F *
h88 =
new TH1F(
"hy",
"h1",200,-10,10);
353 ntuple1->Project(
"hx",
"x");
354 scale = 1/h77->Integral();
357 h77->GetXaxis()->SetLabelSize(0.025);
358 h77->GetYaxis()->SetLabelSize(0.025);
359 h77->GetXaxis()->SetTitleSize(0.035);
360 h77->GetYaxis()->SetTitleSize(0.035);
361 h77->GetXaxis()->SetTitleOffset(1.4);
362 h77->GetYaxis()->SetTitleOffset(1.4);
363 h77->GetXaxis()->SetTitle(
"Position (um)");
364 h77->GetYaxis()->SetTitle(
"Fraction of events");
365 h77->SetTitle(
"Beam X position on cell");
366 h77->SetFillColor(4);
367 h77->SetLineColor(4);
371 ntuple1->Project(
"hy",
"y");
372 scale = 1/h88->Integral();
375 h88->GetXaxis()->SetLabelSize(0.025);
376 h88->GetYaxis()->SetLabelSize(0.025);
377 h88->GetXaxis()->SetTitleSize(0.035);
378 h88->GetYaxis()->SetTitleSize(0.035);
379 h88->GetXaxis()->SetTitleOffset(1.4);
380 h88->GetYaxis()->SetTitleOffset(1.4);
381 h88->GetXaxis()->SetTitle(
"Position (um)");
382 h88->GetYaxis()->SetTitle(
"Fraction of events");
383 h88->SetTitle(
"Beam Y position on cell");
384 h88->SetFillColor(4);
385 h88->SetLineColor(4);
system("rm -rf microbeam.root")
TFile f("microbeam.root")