LArPandoraHelper.cxx

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#include "cetlib_except/exception.h"
#include "messagefacility/MessageLogger/MessageLogger.h"
#include "art/Framework/Principal/Handle.h"
#include "canvas/Persistency/Common/FindManyP.h"
#include "canvas/Persistency/Common/FindOneP.h"

#include "lardataobj/AnalysisBase/T0.h"
#include "lardataobj/AnalysisBase/CosmicTag.h"
#include "lardataobj/AnalysisBase/BackTrackerMatchingData.h"
#include "lardataobj/RecoBase/Hit.h"
#include "lardataobj/RecoBase/Cluster.h"
#include "lardataobj/RecoBase/PFParticle.h"
#include "lardataobj/RecoBase/PFParticleMetadata.h"
#include "lardataobj/RecoBase/Seed.h"
#include "lardataobj/RecoBase/Shower.h"
#include "lardataobj/RecoBase/SpacePoint.h"
#include "lardataobj/RecoBase/Track.h"
#include "lardataobj/RecoBase/Vertex.h"
#include "lardataobj/RecoBase/Wire.h"
#include "lardataobj/RecoBase/Slice.h"
#include "nusimdata/SimulationBase/MCParticle.h"
#include "nusimdata/SimulationBase/MCTruth.h"

#include "larcore/Geometry/Geometry.h"
#include "larcoreobj/SimpleTypesAndConstants/RawTypes.h"
#include "lardata/DetectorInfoServices/DetectorClocksService.h"

#include "Objects/ParticleFlowObject.h"
#include "Pandora/PdgTable.h"
#include "Pandora/PandoraInternal.h"

#include "larpandora/LArPandoraInterface/LArPandoraHelper.h"

#include <limits>
#include <iostream>

namespace lar_pandora
{

void LArPandoraHelper::CollectWires(const art::Event &evt, const std::string &label, WireVector &wireVector)
{
    art::Handle< std::vector<recob::Wire> > theWires;
    evt.getByLabel(label, theWires);

    if (!theWires.isValid())
    {
        mf::LogDebug("LArPandora") << "  Failed to find wires... " << std::endl;
        return;
    }
    else
    {
        mf::LogDebug("LArPandora") << "  Found: " << theWires->size() << " Wires " << std::endl;
    }

    for (unsigned int i = 0; i < theWires->size(); ++i)
    {
        const art::Ptr<recob::Wire> wire(theWires, i);
        wireVector.push_back(wire);
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::CollectHits(const art::Event &evt, const std::string &label, HitVector &hitVector)
{
    art::Handle< std::vector<recob::Hit> > theHits;
    evt.getByLabel(label, theHits);

    if (!theHits.isValid())
    {
        mf::LogDebug("LArPandora") << "  Failed to find hits... " << std::endl;
        return;
    }
    else
    {
        mf::LogDebug("LArPandora") << "  Found: " << theHits->size() << " Hits " << std::endl;
    }

    for (unsigned int i = 0; i < theHits->size(); ++i)
    {
        const art::Ptr<recob::Hit> hit(theHits, i);
        hitVector.push_back(hit);
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::CollectPFParticles(const art::Event &evt, const std::string &label, PFParticleVector &particleVector)
{
    art::Handle< std::vector<recob::PFParticle> > theParticles;
    evt.getByLabel(label, theParticles);

    if (!theParticles.isValid())
    {
        mf::LogDebug("LArPandora") << "  Failed to find particles... " << std::endl;
        return;
    }
    else
    {
        mf::LogDebug("LArPandora") << "  Found: " << theParticles->size() << " PFParticles " << std::endl;
    }

    for (unsigned int i = 0; i < theParticles->size(); ++i)
    {
        const art::Ptr<recob::PFParticle> particle(theParticles, i);
        particleVector.push_back(particle);
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::CollectSpacePoints(const art::Event &evt, const std::string &label, SpacePointVector &spacePointVector,
    SpacePointsToHits &spacePointsToHits)
{
    HitsToSpacePoints hitsToSpacePoints;
    return LArPandoraHelper::CollectSpacePoints(evt, label, spacePointVector, spacePointsToHits, hitsToSpacePoints);
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::CollectSpacePoints(const art::Event &evt, const std::string &label, SpacePointVector &spacePointVector,
    SpacePointsToHits &spacePointsToHits, HitsToSpacePoints &hitsToSpacePoints)
{
    art::Handle< std::vector<recob::SpacePoint> > theSpacePoints;
    evt.getByLabel(label, theSpacePoints);

    if (!theSpacePoints.isValid())
    {
        mf::LogDebug("LArPandora") << "  Failed to find spacepoints... " << std::endl;
        return;
    }
    else
    {
        mf::LogDebug("LArPandora") << "  Found: " << theSpacePoints->size() << " SpacePoints " << std::endl;
    }

    art::FindOneP<recob::Hit> theHitAssns(theSpacePoints, evt, label);
    for (unsigned int i = 0; i < theSpacePoints->size(); ++i)
    {
        const art::Ptr<recob::SpacePoint> spacepoint(theSpacePoints, i);
        spacePointVector.push_back(spacepoint);
        const art::Ptr<recob::Hit> hit = theHitAssns.at(i);
        spacePointsToHits[spacepoint] = hit;
        hitsToSpacePoints[hit] = spacepoint;
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::CollectClusters(const art::Event &evt, const std::string &label, ClusterVector &clusterVector,
    ClustersToHits &clustersToHits)
{
    art::Handle< std::vector<recob::Cluster> > theClusters;
    evt.getByLabel(label, theClusters);

    if (!theClusters.isValid())
    {
        mf::LogDebug("LArPandora") << "  Failed to find clusters... " << std::endl;
        return;
    }
    else
    {
        mf::LogDebug("LArPandora") << "  Found: " << theClusters->size() << " Clusters " << std::endl;
    }

    art::FindManyP<recob::Hit> theHitAssns(theClusters, evt, label);
    for (unsigned int i = 0; i < theClusters->size(); ++i)
    {
        const art::Ptr<recob::Cluster> cluster(theClusters, i);
        clusterVector.push_back(cluster);

        const std::vector< art::Ptr<recob::Hit> > hits = theHitAssns.at(i);
        for (unsigned int j=0; j<hits.size(); ++j)
        {
            const art::Ptr<recob::Hit> hit = hits.at(j);
            clustersToHits[cluster].push_back(hit);
        }
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::CollectPFParticles(const art::Event &evt, const std::string &label, PFParticleVector &particleVector,
    PFParticlesToSpacePoints &particlesToSpacePoints)
{
    art::Handle< std::vector<recob::PFParticle> > theParticles;
    evt.getByLabel(label, theParticles);

    if (!theParticles.isValid())
    {
        mf::LogDebug("LArPandora") << "  Failed to find particles... " << std::endl;
        return;
    }
    else
    {
        mf::LogDebug("LArPandora") << "  Found: " << theParticles->size() << " PFParticles " << std::endl;
    }

    art::FindManyP<recob::SpacePoint> theSpacePointAssns(theParticles, evt, label);
    for (unsigned int i = 0; i < theParticles->size(); ++i)
    {
        const art::Ptr<recob::PFParticle> particle(theParticles, i);
        particleVector.push_back(particle);

        const std::vector< art::Ptr<recob::SpacePoint> > spacepoints = theSpacePointAssns.at(i);
        for (unsigned int j=0; j<spacepoints.size(); ++j)
        {
            const art::Ptr<recob::SpacePoint> spacepoint = spacepoints.at(j);
            particlesToSpacePoints[particle].push_back(spacepoint);
        }
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::CollectPFParticles(const art::Event &evt, const std::string &label, PFParticleVector &particleVector,
    PFParticlesToClusters &particlesToClusters)
{
    art::Handle< std::vector<recob::PFParticle> > theParticles;
    evt.getByLabel(label, theParticles);

    if (!theParticles.isValid())
    {
        mf::LogDebug("LArPandora") << "  Failed to find particles... " << std::endl;
        return;
    }
    else
    {
        mf::LogDebug("LArPandora") << "  Found: " << theParticles->size() << " PFParticles " << std::endl;
    }

    art::FindManyP<recob::Cluster> theClusterAssns(theParticles, evt, label);
    for (unsigned int i = 0; i < theParticles->size(); ++i)
    {
        const art::Ptr<recob::PFParticle> particle(theParticles, i);
        particleVector.push_back(particle);

        const std::vector< art::Ptr<recob::Cluster> > clusters = theClusterAssns.at(i);
        for (unsigned int j=0; j<clusters.size(); ++j)
        {
            const art::Ptr<recob::Cluster> cluster = clusters.at(j);
            particlesToClusters[particle].push_back(cluster);
        }
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::CollectPFParticleMetadata(const art::Event &evt, const std::string &label, PFParticleVector &particleVector,
    PFParticlesToMetadata &particlesToMetadata)
{
    art::Handle< std::vector<recob::PFParticle> > theParticles;
    evt.getByLabel(label, theParticles);

    if (!theParticles.isValid())
    {
        mf::LogDebug("LArPandora") << "  Failed to find particles... " << std::endl;
        return;
    }
    else
    {
        mf::LogDebug("LArPandora") << "  Found: " << theParticles->size() << " PFParticles " << std::endl;
    }

    art::FindManyP<larpandoraobj::PFParticleMetadata> theMetadataAssns(theParticles, evt, label);
    for (unsigned int i = 0; i < theParticles->size(); ++i)
    {
        const art::Ptr<recob::PFParticle> particle(theParticles, i);
        particleVector.push_back(particle);

        const std::vector< art::Ptr<larpandoraobj::PFParticleMetadata> > pfParticleMetadataList = theMetadataAssns.at(i);
        for (unsigned int j=0; j<pfParticleMetadataList.size(); ++j)
        {
            const art::Ptr<larpandoraobj::PFParticleMetadata> pfParticleMetadata = pfParticleMetadataList.at(j);
            particlesToMetadata[particle].push_back(pfParticleMetadata);
        }
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::CollectShowers(const art::Event &evt, const std::string &label, ShowerVector &showerVector,
    PFParticlesToShowers &particlesToShowers)
{
    art::Handle< std::vector<recob::Shower> > theShowers;
    evt.getByLabel(label, theShowers);

    if (!theShowers.isValid())
    {
        mf::LogDebug("LArPandora") << "  Failed to find showers... " << std::endl;
        return;
    }
    else
    {
        mf::LogDebug("LArPandora") << "  Found: " << theShowers->size() << " Showers " << std::endl;
    }

    art::FindManyP<recob::PFParticle> theShowerAssns(theShowers, evt, label);
    for (unsigned int i = 0; i < theShowers->size(); ++i)
    {
        const art::Ptr<recob::Shower> shower(theShowers, i);
        showerVector.push_back(shower);

        const std::vector< art::Ptr<recob::PFParticle> > particles = theShowerAssns.at(i);
        for (unsigned int j=0; j<particles.size(); ++j)
        {
            const art::Ptr<recob::PFParticle> particle = particles.at(j);
            particlesToShowers[particle].push_back(shower);
        }
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::CollectTracks(const art::Event &evt, const std::string &label, TrackVector &trackVector,
    PFParticlesToTracks &particlesToTracks)
{
    art::Handle< std::vector<recob::Track> > theTracks;
    evt.getByLabel(label, theTracks);

    if (!theTracks.isValid())
    {
        mf::LogDebug("LArPandora") << "  Failed to find tracks... " << std::endl;
        return;
    }
    else
    {
        mf::LogDebug("LArPandora") << "  Found: " << theTracks->size() << " Tracks " << std::endl;
    }

    art::FindManyP<recob::PFParticle> theTrackAssns(theTracks, evt, label);
    for (unsigned int i = 0; i < theTracks->size(); ++i)
    {
        const art::Ptr<recob::Track> track(theTracks, i);
        trackVector.push_back(track);

        const std::vector< art::Ptr<recob::PFParticle> > particles = theTrackAssns.at(i);
        for (unsigned int j=0; j<particles.size(); ++j)
        {
            const art::Ptr<recob::PFParticle> particle = particles.at(j);
            particlesToTracks[particle].push_back(track);
        }
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::CollectTracks(const art::Event &evt, const std::string &label, TrackVector &trackVector, TracksToHits &tracksToHits)
{
    art::Handle< std::vector<recob::Track> > theTracks;
    evt.getByLabel(label, theTracks);

    if (!theTracks.isValid())
    {
        mf::LogDebug("LArPandora") << "  Failed to find tracks... " << std::endl;
        return;
    }
    else
    {
        mf::LogDebug("LArPandora") << "  Found: " << theTracks->size() << " Tracks " << std::endl;
    }

    art::FindManyP<recob::Hit> theHitAssns(theTracks, evt, label);
    for (unsigned int i = 0; i < theTracks->size(); ++i)
    {
        const art::Ptr<recob::Track> track(theTracks, i);
        trackVector.push_back(track);

        const std::vector< art::Ptr<recob::Hit> > hits = theHitAssns.at(i);
        for (unsigned int j=0; j<hits.size(); ++j)
        {
            const art::Ptr<recob::Hit> hit = hits.at(j);
            tracksToHits[track].push_back(hit);
        }
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::CollectShowers(const art::Event &evt, const std::string &label, ShowerVector &showerVector, ShowersToHits &showersToHits)
{
    art::Handle< std::vector<recob::Shower> > theShowers;
    evt.getByLabel(label, theShowers);

    if (!theShowers.isValid())
    {
        mf::LogDebug("LArPandora") << "  Failed to find showers... " << std::endl;
        return;
    }
    else
    {
        mf::LogDebug("LArPandora") << "  Found: " << theShowers->size() << " Showers " << std::endl;
    }

    art::FindManyP<recob::Hit> theHitAssns(theShowers, evt, label);
    for (unsigned int i = 0; i < theShowers->size(); ++i)
    {
        const art::Ptr<recob::Shower> shower(theShowers, i);
        showerVector.push_back(shower);

        const std::vector< art::Ptr<recob::Hit> > hits = theHitAssns.at(i);
        for (unsigned int j=0; j<hits.size(); ++j)
        {
            const art::Ptr<recob::Hit> hit = hits.at(j);
            showersToHits[shower].push_back(hit);
        }
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::CollectSeeds(const art::Event &evt, const std::string &label, SeedVector &seedVector,
    PFParticlesToSeeds &particlesToSeeds)
{
    art::Handle< std::vector<recob::Seed> > theSeeds;
    evt.getByLabel(label, theSeeds);

    if (!theSeeds.isValid())
    {
        mf::LogDebug("LArPandora") << "  Failed to find seeds... " << std::endl;
        return;
    }
    else
    {
        mf::LogDebug("LArPandora") << "  Found: " << theSeeds->size() << " Seeds " << std::endl;
    }

    art::FindManyP<recob::PFParticle> theSeedAssns(theSeeds, evt, label);
    for (unsigned int i = 0; i < theSeeds->size(); ++i)
    {
        const art::Ptr<recob::Seed> seed(theSeeds, i);
        seedVector.push_back(seed);

        const std::vector< art::Ptr<recob::PFParticle> > particles = theSeedAssns.at(i);
        for (unsigned int j=0; j<particles.size(); ++j)
        {
            const art::Ptr<recob::PFParticle> particle = particles.at(j);
            particlesToSeeds[particle].push_back(seed);
        }
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::CollectSeeds(const art::Event &evt, const std::string &label, SeedVector &seedVector, SeedsToHits &seedsToHits)
{
    art::Handle< std::vector<recob::Seed> > theSeeds;
    evt.getByLabel(label, theSeeds);

    if (!theSeeds.isValid())
    {
        mf::LogDebug("LArPandora") << "  Failed to find seeds... " << std::endl;
        return;
    }
    else
    {
        mf::LogDebug("LArPandora") << "  Found: " << theSeeds->size() << " Seeds " << std::endl;
    }

    art::FindOneP<recob::Hit> theHitAssns(theSeeds, evt, label);

    if (!theHitAssns.isValid())
    {
        mf::LogDebug("LArPandora") << "  Failed to find seed associations... " << std::endl;
        return;
    }

    for (unsigned int i = 0; i < theSeeds->size(); ++i)
    {
        const art::Ptr<recob::Seed> seed(theSeeds, i);
        seedVector.push_back(seed);
        const art::Ptr<recob::Hit> hit = theHitAssns.at(i);
        seedsToHits[seed] = hit;
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::CollectVertices(const art::Event &evt, const std::string &label, VertexVector &vertexVector,
    PFParticlesToVertices &particlesToVertices)
{
    art::Handle< std::vector<recob::Vertex> > theVertices;
    evt.getByLabel(label, theVertices);

    if (!theVertices.isValid())
    {
        mf::LogDebug("LArPandora") << "  Failed to find vertices... " << std::endl;
        return;
    }
    else
    {
        mf::LogDebug("LArPandora") << "  Found: " << theVertices->size() << " Vertices " << std::endl;
    }

    art::FindManyP<recob::PFParticle> theVerticesAssns(theVertices, evt, label);
    for (unsigned int i = 0; i < theVertices->size(); ++i)
    {
        const art::Ptr<recob::Vertex> vertex(theVertices, i);
        vertexVector.push_back(vertex);

        const std::vector< art::Ptr<recob::PFParticle> > particles = theVerticesAssns.at(i);
        for (unsigned int j=0; j<particles.size(); ++j)
        {
            const art::Ptr<recob::PFParticle> particle = particles.at(j);
            particlesToVertices[particle].push_back(vertex);
        }
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::BuildPFParticleHitMaps(const PFParticleVector &particleVector, const PFParticlesToSpacePoints &particlesToSpacePoints,
    const SpacePointsToHits &spacePointsToHits, PFParticlesToHits &particlesToHits, HitsToPFParticles &hitsToParticles,
    const DaughterMode daughterMode)
{
    // Build mapping from particle to particle ID for parent/daughter navigation
    PFParticleMap particleMap;

    for (PFParticleVector::const_iterator iter1 = particleVector.begin(), iterEnd1 = particleVector.end(); iter1 != iterEnd1; ++iter1)
    {
        const art::Ptr<recob::PFParticle> particle = *iter1;
        particleMap[particle->Self()] = particle;
    }

    // Loop over hits and build mapping between reconstructed final-state particles and reconstructed hits
    for (PFParticlesToSpacePoints::const_iterator iter1 = particlesToSpacePoints.begin(), iterEnd1 = particlesToSpacePoints.end();
        iter1 != iterEnd1; ++iter1)
    {
        const art::Ptr<recob::PFParticle> thisParticle = iter1->first;
        const art::Ptr<recob::PFParticle> particle((kAddDaughters == daughterMode) ?
            LArPandoraHelper::GetFinalStatePFParticle(particleMap, thisParticle) : thisParticle);

        if ((kIgnoreDaughters == daughterMode) && !LArPandoraHelper::IsFinalState(particleMap, particle))
            continue;

        const SpacePointVector &spacePointVector = iter1->second;

        for (SpacePointVector::const_iterator iter2 = spacePointVector.begin(), iterEnd2 = spacePointVector.end(); iter2 != iterEnd2; ++iter2)
        {
            const art::Ptr<recob::SpacePoint> spacepoint = *iter2;

            SpacePointsToHits::const_iterator iter3 = spacePointsToHits.find(spacepoint);
            if (spacePointsToHits.end() == iter3)
                throw cet::exception("LArPandora") << " PandoraCollector::BuildPFParticleHitMaps --- Found a space point without an associated hit ";

            const art::Ptr<recob::Hit> hit = iter3->second;

            particlesToHits[particle].push_back(hit);
            hitsToParticles[hit] = particle;
        }
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::BuildPFParticleHitMaps(const PFParticleVector &particleVector, const PFParticlesToClusters &particlesToClusters,
    const ClustersToHits &clustersToHits, PFParticlesToHits &particlesToHits, HitsToPFParticles &hitsToParticles,
    const DaughterMode daughterMode)
{
    // Build mapping from particle to particle ID for parent/daughter navigation
    PFParticleMap particleMap;

    for (PFParticleVector::const_iterator iter1 = particleVector.begin(), iterEnd1 = particleVector.end(); iter1 != iterEnd1; ++iter1)
    {
        const art::Ptr<recob::PFParticle> particle = *iter1;
        particleMap[particle->Self()] = particle;
    }

    // Loop over hits and build mapping between reconstructed final-state particles and reconstructed hits
    for (PFParticlesToClusters::const_iterator iter1 = particlesToClusters.begin(), iterEnd1 = particlesToClusters.end();
        iter1 != iterEnd1; ++iter1)
    {
        const art::Ptr<recob::PFParticle> thisParticle = iter1->first;
        const art::Ptr<recob::PFParticle> particle((kAddDaughters == daughterMode) ?
            LArPandoraHelper::GetFinalStatePFParticle(particleMap, thisParticle) : thisParticle);

        if ((kIgnoreDaughters == daughterMode) && !LArPandoraHelper::IsFinalState(particleMap, particle))
            continue;

        const ClusterVector &clusterVector = iter1->second;
        for (ClusterVector::const_iterator iter2 = clusterVector.begin(), iterEnd2 = clusterVector.end(); iter2 != iterEnd2; ++iter2)
        {
            const art::Ptr<recob::Cluster> cluster = *iter2;

            ClustersToHits::const_iterator iter3 = clustersToHits.find(cluster);
            if (clustersToHits.end() == iter3)
                throw cet::exception("LArPandora") << " PandoraCollector::BuildPFParticleHitMaps --- Found a space point without an associated hit ";

            const HitVector &hitVector = iter3->second;
            for (HitVector::const_iterator iter4 = hitVector.begin(), iterEnd4 = hitVector.end(); iter4 != iterEnd4; ++iter4)
            {
                const art::Ptr<recob::Hit> hit = *iter4;

                particlesToHits[particle].push_back(hit);
                hitsToParticles[hit] = particle;
            }
        }
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::BuildPFParticleHitMaps(const art::Event &evt, const std::string &label,
    PFParticlesToHits &particlesToHits, HitsToPFParticles &hitsToParticles, const DaughterMode daughterMode, const bool useClusters)
{
    return LArPandoraHelper::BuildPFParticleHitMaps(evt, label, label, particlesToHits, hitsToParticles, daughterMode, useClusters);
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::BuildPFParticleHitMaps(const art::Event &evt, const std::string &label_pfpart, const std::string &label_middle,
    PFParticlesToHits &particlesToHits, HitsToPFParticles &hitsToParticles, const DaughterMode daughterMode, const bool useClusters)
{
    // Use intermediate clusters
    if (useClusters)
    {
        PFParticleVector particleVector;
        PFParticlesToClusters particlesToClusters;

        ClusterVector clusterVector;
        ClustersToHits clustersToHits;

        LArPandoraHelper::CollectPFParticles(evt, label_pfpart, particleVector, particlesToClusters);
        LArPandoraHelper::CollectClusters(evt, label_middle, clusterVector, clustersToHits);

        LArPandoraHelper::BuildPFParticleHitMaps(particleVector, particlesToClusters, clustersToHits,
            particlesToHits, hitsToParticles, daughterMode);
    }

    // Use intermediate space points
    else
    {
        PFParticleVector particleVector;
        PFParticlesToSpacePoints particlesToSpacePoints;

        SpacePointVector spacePointVector;
        SpacePointsToHits spacePointsToHits;

        LArPandoraHelper::CollectPFParticles(evt, label_pfpart, particleVector, particlesToSpacePoints);
        LArPandoraHelper::CollectSpacePoints(evt, label_middle, spacePointVector, spacePointsToHits);

        LArPandoraHelper::BuildPFParticleHitMaps(particleVector, particlesToSpacePoints, spacePointsToHits,
            particlesToHits, hitsToParticles, daughterMode);
  }
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::SelectNeutrinoPFParticles(const PFParticleVector &inputParticles, PFParticleVector &outputParticles)
{
    for (PFParticleVector::const_iterator iter = inputParticles.begin(), iterEnd = inputParticles.end(); iter != iterEnd; ++iter)
    {
        const art::Ptr<recob::PFParticle> particle = *iter;

        if (LArPandoraHelper::IsNeutrino(particle))
            outputParticles.push_back(particle);
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::SelectFinalStatePFParticles(const PFParticleVector &inputParticles, PFParticleVector &outputParticles)
{
    // Build mapping from particle to particle ID for parent/daughter navigation
    PFParticleMap particleMap;

    for (PFParticleVector::const_iterator iter = inputParticles.begin(), iterEnd = inputParticles.end(); iter != iterEnd; ++iter)
    {
        const art::Ptr<recob::PFParticle> particle = *iter;
        particleMap[particle->Self()] = particle;
    }

    // Select final-state particles
    for (PFParticleVector::const_iterator iter = inputParticles.begin(), iterEnd = inputParticles.end(); iter != iterEnd; ++iter)
    {
        const art::Ptr<recob::PFParticle> particle = *iter;

        if (LArPandoraHelper::IsFinalState(particleMap, particle))
            outputParticles.push_back(particle);
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::CollectCosmicTags(const art::Event &evt, const std::string &label, CosmicTagVector &cosmicTagVector,
    TracksToCosmicTags &tracksToCosmicTags)
{
    art::Handle< std::vector<anab::CosmicTag> > theCosmicTags;
    evt.getByLabel(label, theCosmicTags);

    if (theCosmicTags.isValid())
    {
        art::FindOneP<recob::Track> theCosmicAssns(theCosmicTags, evt, label); // We assume there is one tag per algorithm
        for (unsigned int i = 0; i < theCosmicTags->size(); ++i)
        {
            const art::Ptr<anab::CosmicTag> cosmicTag(theCosmicTags, i);
            const art::Ptr<recob::Track> track = theCosmicAssns.at(i);
            tracksToCosmicTags[track].push_back(cosmicTag); // We assume there could be multiple algorithms
            cosmicTagVector.push_back(cosmicTag);
        }
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::CollectT0s(const art::Event &evt, const std::string &label, T0Vector &t0Vector, PFParticlesToT0s &particlesToT0s)
{
    art::Handle< std::vector<anab::T0> > theT0s;
    evt.getByLabel(label, theT0s);

    if (theT0s.isValid())
    {
        art::FindManyP<recob::PFParticle> theAssns(theT0s, evt, label);
        for (unsigned int i = 0; i < theT0s->size(); ++i)
        {
            const art::Ptr<anab::T0> theT0(theT0s, i);
            t0Vector.push_back(theT0);

            const std::vector< art::Ptr<recob::PFParticle> > particles = theAssns.at(i);
            for (unsigned int j=0; j<particles.size(); ++j)
            {
                const art::Ptr<recob::PFParticle> theParticle = particles.at(j);
                particlesToT0s[theParticle].push_back(theT0); // We assume there could be multiple T0s per PFParticle
            }
        }
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::CollectSimChannels(const art::Event &evt, const std::string &label, SimChannelVector &simChannelVector)
{
    if (evt.isRealData())
        throw cet::exception("LArPandora") << " PandoraCollector::CollectSimChannels --- Trying to access MC truth from real data ";

    art::Handle< std::vector<sim::SimChannel> > theSimChannels;
    evt.getByLabel(label, theSimChannels);

    if (!theSimChannels.isValid())
    {
        mf::LogDebug("LArPandora") << "  Failed to find sim channels... " << std::endl;
        return;
    }
    else
    {
        mf::LogDebug("LArPandora") << "  Found: " << theSimChannels->size() << " SimChannels " << std::endl;
    }

    for (unsigned int i = 0; i < theSimChannels->size(); ++i)
    {
        const art::Ptr<sim::SimChannel> channel(theSimChannels, i);
        simChannelVector.push_back(channel);
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::CollectMCParticles(const art::Event &evt, const std::string &label, MCParticleVector &particleVector)
{
    if (evt.isRealData())
        throw cet::exception("LArPandora") << " PandoraCollector::CollectMCParticles --- Trying to access MC truth from real data ";

    art::Handle< RawMCParticleVector > theParticles;
    evt.getByLabel(label, theParticles);

    if (!theParticles.isValid())
    {
        mf::LogDebug("LArPandora") << "  Failed to find MC particles... " << std::endl;
        return;
    }
    else
    {
        mf::LogDebug("LArPandora") << "  Found: " << theParticles->size() << " MC particles " << std::endl;
    }

    for (unsigned int i = 0; i < theParticles->size(); ++i)
    {
        const art::Ptr<simb::MCParticle> particle(theParticles, i);
        particleVector.push_back(particle);
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::CollectGeneratorMCParticles(const art::Event &evt, const std::string &label, RawMCParticleVector &particleVector)
{
    if (evt.isRealData())
        throw cet::exception("LArPandora") << " PandoraCollector::CollectGeneratorMCParticles --- Trying to access MC truth from real data ";

    art::Handle< std::vector<simb::MCTruth> > mcTruthBlocks;
    evt.getByLabel(label, mcTruthBlocks);

    if (!mcTruthBlocks.isValid())
    {
        mf::LogDebug("LArPandora") << "  Failed to find MC truth blocks from generator... " << std::endl;
        return;
    }
    else
    {
        mf::LogDebug("LArPandora") << "  Found: " << mcTruthBlocks->size() << " MC truth blocks " << std::endl;
    }

    if (mcTruthBlocks->size() != 1)
        throw cet::exception("LArPandora") << " PandoraCollector::CollectGeneratorMCParticles --- Unexpected number of MC truth blocks ";

    const art::Ptr<simb::MCTruth> mcTruth(mcTruthBlocks, 0);

    for (int i = 0; i < mcTruth->NParticles(); ++i)
    {
        particleVector.push_back(mcTruth->GetParticle(i));
    }
}


//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::CollectMCParticles(const art::Event &evt, const std::string &label, MCTruthToMCParticles &truthToParticles,
    MCParticlesToMCTruth &particlesToTruth)
{
    if (evt.isRealData())
        throw cet::exception("LArPandora") << " PandoraCollector::CollectMCParticles --- Trying to access MC truth from real data ";

    art::Handle< RawMCParticleVector > theParticles;
    evt.getByLabel(label, theParticles);

    if (!theParticles.isValid())
    {
        mf::LogDebug("LArPandora") << "  Failed to find MC particles... " << std::endl;
        return;
    }
    else
    {
        mf::LogDebug("LArPandora") << "  Found: " << theParticles->size() << " MC particles " << std::endl;
    }

    art::FindOneP<simb::MCTruth> theTruthAssns(theParticles, evt, label);

    for (unsigned int i = 0, iEnd = theParticles->size(); i < iEnd; ++i)
    {
        const art::Ptr<simb::MCParticle> particle(theParticles, i);
        const art::Ptr<simb::MCTruth> truth(theTruthAssns.at(i));
        truthToParticles[truth].push_back(particle);
        particlesToTruth[particle] = truth;
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------


void LArPandoraHelper::BuildMCParticleHitMaps(const HitVector &hitVector, const SimChannelVector &simChannelVector,
    HitsToTrackIDEs &hitsToTrackIDEs)
{
    auto const* ts = lar::providerFrom<detinfo::DetectorClocksService>();

    SimChannelMap simChannelMap;

    for (SimChannelVector::const_iterator iter = simChannelVector.begin(), iterEnd = simChannelVector.end(); iter != iterEnd; ++iter)
    {
        const art::Ptr<sim::SimChannel> simChannel = *iter;
        simChannelMap.insert(SimChannelMap::value_type(simChannel->Channel(), simChannel));
    }

    for (HitVector::const_iterator iter = hitVector.begin(), iterEnd = hitVector.end(); iter != iterEnd; ++iter)
    {
        const art::Ptr<recob::Hit> hit = *iter;

        SimChannelMap::const_iterator sIter = simChannelMap.find(hit->Channel());
        if (simChannelMap.end() == sIter)
            continue; // Hit has no truth information [continue]

        // ATTN: Need to convert TDCtick (integer) to TDC (unsigned integer) before passing to simChannel
        const raw::TDCtick_t start_tick(ts->TPCTick2TDC(hit->PeakTimeMinusRMS()));
        const raw::TDCtick_t end_tick(ts->TPCTick2TDC(hit->PeakTimePlusRMS()));
        const unsigned int start_tdc((start_tick < 0) ? 0 : start_tick);
        const unsigned int end_tdc(end_tick);

        if (start_tdc > end_tdc)
            continue; // Hit undershoots the readout window [continue]

        const art::Ptr<sim::SimChannel> simChannel = sIter->second;
        const TrackIDEVector trackCollection(simChannel->TrackIDEs(start_tdc, end_tdc));

        if (trackCollection.empty())
            continue; // Hit has no truth information [continue]

        for (unsigned int iTrack = 0, iTrackEnd = trackCollection.size(); iTrack < iTrackEnd; ++iTrack)
        {
            const sim::TrackIDE trackIDE = trackCollection.at(iTrack);
            hitsToTrackIDEs[hit].push_back(trackIDE);
        }
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::BuildMCParticleHitMaps(const HitsToTrackIDEs &hitsToTrackIDEs, const MCTruthToMCParticles &truthToParticles,
    MCParticlesToHits &particlesToHits, HitsToMCParticles &hitsToParticles, const DaughterMode daughterMode)
{
    // Build mapping between particles and track IDs for parent/daughter navigation
    MCParticleMap particleMap;

    for (MCTruthToMCParticles::const_iterator iter1 = truthToParticles.begin(), iterEnd1 = truthToParticles.end(); iter1 != iterEnd1; ++iter1)
    {
        const MCParticleVector &particleVector = iter1->second;
        for (MCParticleVector::const_iterator iter2 = particleVector.begin(), iterEnd2 = particleVector.end(); iter2 != iterEnd2; ++iter2)
        {
            const art::Ptr<simb::MCParticle> particle = *iter2;
            particleMap[particle->TrackId()] = particle;
        }
    }

    // Loop over hits and build mapping between reconstructed hits and true particles
    for (HitsToTrackIDEs::const_iterator iter1 = hitsToTrackIDEs.begin(), iterEnd1 = hitsToTrackIDEs.end(); iter1 != iterEnd1; ++iter1)
    {
        const art::Ptr<recob::Hit> hit = iter1->first;
        const TrackIDEVector &trackCollection = iter1->second;

        int bestTrackID(-1);
        float bestEnergyFrac(0.f);

        for (TrackIDEVector::const_iterator iter2 = trackCollection.begin(), iterEnd2 = trackCollection.end(); iter2 != iterEnd2; ++iter2)
        {
            const sim::TrackIDE &trackIDE = *iter2;
            const int trackID(std::abs(trackIDE.trackID)); // TODO: Find out why std::abs is needed
            const float energyFrac(trackIDE.energyFrac);

            if (energyFrac > bestEnergyFrac)
            {
                bestEnergyFrac = energyFrac;
                bestTrackID = trackID;
            }
        }

        if (bestTrackID >= 0)
        {
            MCParticleMap::const_iterator iter3 = particleMap.find(bestTrackID);
            if (particleMap.end() == iter3)
                throw cet::exception("LArPandora") << " PandoraCollector::BuildMCParticleHitMaps --- Found a track ID without an MC Particle ";

            try
            {
                const art::Ptr<simb::MCParticle> thisParticle = iter3->second;
                const art::Ptr<simb::MCParticle> primaryParticle(LArPandoraHelper::GetFinalStateMCParticle(particleMap, thisParticle));
                const art::Ptr<simb::MCParticle> selectedParticle((kAddDaughters == daughterMode) ? primaryParticle : thisParticle);

                if ((kIgnoreDaughters == daughterMode) && (selectedParticle != primaryParticle))
                    continue;

                if (!(LArPandoraHelper::IsVisible(selectedParticle)))
                    continue;

                particlesToHits[selectedParticle].push_back(hit);
                hitsToParticles[hit] = selectedParticle;
            }
            catch (cet::exception &e)
            {
            }
        }
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::BuildMCParticleHitMaps(const art::Event &evt, const std::string &label, const HitVector &hitVector,
    MCParticlesToHits &particlesToHits, HitsToMCParticles &hitsToParticles, const DaughterMode daughterMode)
{
    SimChannelVector simChannelVector;
    MCTruthToMCParticles truthToParticles;
    MCParticlesToMCTruth particlesToTruth;
    HitsToTrackIDEs hitsToTrackIDEs;

    LArPandoraHelper::CollectSimChannels(evt, label, simChannelVector);
    LArPandoraHelper::CollectMCParticles(evt, label, truthToParticles, particlesToTruth);
    LArPandoraHelper::BuildMCParticleHitMaps(hitVector, simChannelVector, hitsToTrackIDEs);
    LArPandoraHelper::BuildMCParticleHitMaps(hitsToTrackIDEs, truthToParticles, particlesToHits, hitsToParticles, daughterMode);
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::BuildMCParticleHitMaps(const art::Event &evt, const std::string &hitLabel, const std::string &backtrackLabel,
    HitsToTrackIDEs &hitsToTrackIDEs)
{
    // Start by getting the collection of Hits
    art::Handle< std::vector<recob::Hit> > theHits;
    evt.getByLabel(hitLabel, theHits);

    if (!theHits.isValid())
    {
        mf::LogDebug("LArPandora") << "  Failed to find hits... " << std::endl;
        return;
    }

    HitVector hitVector;

    for (unsigned int i = 0; i < theHits->size(); ++i)
    {
        const art::Ptr<recob::Hit> hit(theHits, i);
        hitVector.push_back(hit);
    }

    // Now get the associations between Hits and MCParticles
    std::vector<anab::BackTrackerHitMatchingData const*> backtrackerVector;

    MCParticleVector particleVector;

    art::FindManyP<simb::MCParticle, anab::BackTrackerHitMatchingData> particles_per_hit(theHits, evt, backtrackLabel);

    if (!particles_per_hit.isValid())
    {
        mf::LogDebug("LArPandora") << "  Failed to find reco-truth matching... " << std::endl;
        return;
    }

    // Now loop over the hits and build a collection of IDEs
    for (HitVector::const_iterator iter = hitVector.begin(), iterEnd = hitVector.end(); iter != iterEnd; ++iter)
    {
        const art::Ptr<recob::Hit> hit = *iter;

        particleVector.clear(); backtrackerVector.clear();
        particles_per_hit.get(hit.key(), particleVector, backtrackerVector);

        for (unsigned int j = 0; j < particleVector.size(); ++j)
        {
            const art::Ptr<simb::MCParticle> particle = particleVector[j];

            sim::TrackIDE trackIDE;
            trackIDE.trackID = particle->TrackId();
            trackIDE.energy = backtrackerVector[j]->energy;
            trackIDE.energyFrac = backtrackerVector[j]->ideFraction;

            hitsToTrackIDEs[hit].push_back(trackIDE);
        }
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::BuildMCParticleHitMaps(const art::Event &evt, const std::string &truthLabel, const std::string &hitLabel,
    const std::string &backtrackLabel, MCParticlesToHits &particlesToHits, HitsToMCParticles &hitsToParticles, const DaughterMode daughterMode)
{
    MCTruthToMCParticles truthToParticles;
    MCParticlesToMCTruth particlesToTruth;
    HitsToTrackIDEs hitsToTrackIDEs;

    LArPandoraHelper::CollectMCParticles(evt, truthLabel, truthToParticles, particlesToTruth);
    LArPandoraHelper::BuildMCParticleHitMaps(evt, hitLabel, backtrackLabel, hitsToTrackIDEs);
    LArPandoraHelper::BuildMCParticleHitMaps(hitsToTrackIDEs, truthToParticles, particlesToHits, hitsToParticles, daughterMode);
}

//------------------------------------------------------------------------------------------------------------------------------------------

template <typename T>
void LArPandoraHelper::GetAssociatedHits(const art::Event &evt, const std::string &label, const std::vector<art::Ptr<T> > &inputVector,
    HitVector &associatedHits, const pandora::IntVector* const indexVector)
{

    art::Handle<std::vector<T> > handle;
    evt.getByLabel(label, handle);
    art::FindManyP<recob::Hit> hitAssoc(handle, evt, label);

    if (indexVector != nullptr)
    {
        if (inputVector.size() != indexVector->size())
            throw cet::exception("LArPandora") << " PandoraHelper::GetAssociatedHits --- trying to use an index vector not matching input vector";

        // If indexVector is filled, sort hits according to trajectory points order
        for (int index : (*indexVector))
        {
            const art::Ptr<T> &element = inputVector.at(index);
            const HitVector &hits = hitAssoc.at(element.key());
            associatedHits.insert(associatedHits.end(), hits.begin(), hits.end());
        }
    }
    else
    {
        // If indexVector is empty just loop through inputSpacePoints
        for (const art::Ptr<T> &element : inputVector)
        {
            const HitVector &hits = hitAssoc.at(element.key());
            associatedHits.insert(associatedHits.end(), hits.begin(), hits.end());
        }
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::BuildMCParticleMap(const MCParticleVector &particleVector, MCParticleMap &particleMap)
{
    for (MCParticleVector::const_iterator iter = particleVector.begin(), iterEnd = particleVector.end(); iter != iterEnd; ++iter)
    {
        const art::Ptr<simb::MCParticle> particle = *iter;
        particleMap[particle->TrackId()] = particle;
        particleMap[particle->TrackId()] = particle;
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------

void LArPandoraHelper::BuildPFParticleMap(const PFParticleVector &particleVector, PFParticleMap &particleMap)
{
    for (PFParticleVector::const_iterator iter = particleVector.begin(), iterEnd = particleVector.end(); iter != iterEnd; ++iter)
    {
        const art::Ptr<recob::PFParticle> particle = *iter;
        particleMap[particle->Self()] = particle;
    }
}

//------------------------------------------------------------------------------------------------------------------------------------------

art::Ptr<recob::PFParticle> LArPandoraHelper::GetParentPFParticle(const PFParticleMap &particleMap, const art::Ptr<recob::PFParticle> inputParticle)
{
    // Navigate upward through PFO daughter/parent links - return the top-level PF Particle
    int primaryTrackID(inputParticle->Self());

    if (!inputParticle->IsPrimary())
    {
        while(1)
        {
            PFParticleMap::const_iterator pIter1 = particleMap.find(primaryTrackID);
            if (particleMap.end() == pIter1)
                throw cet::exception("LArPandora") << " PandoraCollector::GetParentPFParticle --- Found a PFParticle without a particle ID ";

            const art::Ptr<recob::PFParticle> primaryParticle = pIter1->second;
            if (primaryParticle->IsPrimary())
                break;

            primaryTrackID = primaryParticle->Parent();
        }
    }

    PFParticleMap::const_iterator pIter2 = particleMap.find(primaryTrackID);
    if (particleMap.end() == pIter2)
        throw cet::exception("LArPandora") << " PandoraCollector::GetParentPFParticle --- Found a PFParticle without a particle ID ";

    const art::Ptr<recob::PFParticle> outputParticle = pIter2->second;
    return outputParticle;
}

//------------------------------------------------------------------------------------------------------------------------------------------

art::Ptr<recob::PFParticle> LArPandoraHelper::GetFinalStatePFParticle(const PFParticleMap &particleMap, const art::Ptr<recob::PFParticle> inputParticle)
{
    // Navigate upward through PFO daughter/parent links - return the top-level non-neutrino PF Particle
    int primaryTrackID(inputParticle->Self());

    if (!inputParticle->IsPrimary())
    {
        int parentTrackID(inputParticle->Parent());

        while(1)
        {
            PFParticleMap::const_iterator pIter1 = particleMap.find(parentTrackID);
            if (particleMap.end() == pIter1)
                throw cet::exception("LArPandora") << " PandoraCollector::GetFinalStatePFParticle --- Found a PFParticle without a particle ID ";

            const art::Ptr<recob::PFParticle> parentParticle = pIter1->second;
            if (LArPandoraHelper::IsNeutrino(parentParticle))
                break;

            primaryTrackID = parentTrackID;

            if (parentParticle->IsPrimary())
                break;

            parentTrackID = parentParticle->Parent();
        }
    }

    PFParticleMap::const_iterator pIter2 = particleMap.find(primaryTrackID);
    if (particleMap.end() == pIter2)
        throw cet::exception("LArPandora") << " PandoraCollector::GetFinalStatePFParticle --- Found a PFParticle without a particle ID ";

    const art::Ptr<recob::PFParticle> outputParticle = pIter2->second;
    return outputParticle;
}

//------------------------------------------------------------------------------------------------------------------------------------------

art::Ptr<simb::MCParticle> LArPandoraHelper::GetParentMCParticle(const MCParticleMap &particleMap, const art::Ptr<simb::MCParticle> inputParticle)
{
    // Navigate upward through MC daughter/parent links - return the top-level MC particle
    int primaryTrackID(inputParticle->TrackId());
    int parentTrackID(inputParticle->Mother());

    while(1)
    {
        MCParticleMap::const_iterator pIter1 = particleMap.find(parentTrackID);
        if (particleMap.end() == pIter1)
            break; // Can't find MC Particle for this track ID [break]

        const art::Ptr<simb::MCParticle> particle = pIter1->second;

        primaryTrackID = parentTrackID;
        parentTrackID = particle->Mother();
    }

    MCParticleMap::const_iterator pIter2 = particleMap.find(primaryTrackID);
    if (particleMap.end() == pIter2)
        throw cet::exception("LArPandora") << " PandoraCollector::GetParentMCParticle --- Found a track ID without a MC particle ";

    const art::Ptr<simb::MCParticle> outputParticle = pIter2->second;
    return outputParticle;
}

//------------------------------------------------------------------------------------------------------------------------------------------

art::Ptr<simb::MCParticle> LArPandoraHelper::GetFinalStateMCParticle(const MCParticleMap &particleMap, const art::Ptr<simb::MCParticle> inputParticle)
{
    // Navigate upward through MC daughter/parent links - collect this particle and all its parents
    MCParticleVector mcVector;

    int trackID(inputParticle->TrackId());

    while(1)
    {
        MCParticleMap::const_iterator pIter = particleMap.find(trackID);
        if (particleMap.end() == pIter)
            break; // Can't find MC Particle for this track ID [break]

        const art::Ptr<simb::MCParticle> particle = pIter->second;
        mcVector.push_back(particle);

        trackID = particle->Mother();
    }

    // Navigate downward through MC parent/daughter links - return the first long-lived charged particle
    for (MCParticleVector::const_reverse_iterator iter = mcVector.rbegin(), iterEnd = mcVector.rend(); iter != iterEnd; ++iter)
    {
        const art::Ptr<simb::MCParticle> nextParticle = *iter;

        if (LArPandoraHelper::IsVisible(nextParticle))
            return nextParticle;
    }

    throw cet::exception("LArPandora"); // need to catch this exception
}

//------------------------------------------------------------------------------------------------------------------------------------------

art::Ptr<recob::Track> LArPandoraHelper::GetPrimaryTrack(const PFParticlesToTracks &particlesToTracks, const art::Ptr<recob::PFParticle> particle)
{
    PFParticlesToTracks::const_iterator tIter = particlesToTracks.find(particle);

    if (particlesToTracks.end() == tIter || tIter->second.empty())
        throw cet::exception("LArPandora") << " PandoraCollector::GetPrimaryTrack --- Failed to find associated track ";

    if (tIter->second.size() != 1)
        throw cet::exception("LArPandora") << " PandoraCollector::GetPrimaryTrack --- Found more than one associated track ";

    const art::Ptr<recob::Track> primaryTrack = *(tIter->second.begin());
    return primaryTrack;
}

//------------------------------------------------------------------------------------------------------------------------------------------

int LArPandoraHelper::GetGeneration(const PFParticleMap &particleMap, const art::Ptr<recob::PFParticle> inputParticle)
{
    // Navigate upward through PFO daughter/parent links - return the top-level PF Particle
    int nGenerations(0);
    int primaryTrackID(inputParticle->Self());

    while(1)
    {
        PFParticleMap::const_iterator pIter = particleMap.find(primaryTrackID);
        if (particleMap.end() == pIter)
            throw cet::exception("LArPandora") << " PandoraCollector::GetGeneration --- Found a PFParticle without a particle ID ";

        ++nGenerations;

        const art::Ptr<recob::PFParticle> primaryParticle = pIter->second;
        if (primaryParticle->IsPrimary())
            break;

        primaryTrackID = primaryParticle->Parent();
    }

    return nGenerations;
}

//------------------------------------------------------------------------------------------------------------------------------------------

int LArPandoraHelper::GetParentNeutrino(const PFParticleMap &particleMap, const art::Ptr<recob::PFParticle> daughterParticle)
{
    art::Ptr<recob::PFParticle> parentParticle = LArPandoraHelper::GetParentPFParticle(particleMap, daughterParticle);

    if (LArPandoraHelper::IsNeutrino(parentParticle))
        return parentParticle->PdgCode();

    if (parentParticle->IsPrimary())
        return 0;

    const int parentID(parentParticle->Parent());

    PFParticleMap::const_iterator pIter = particleMap.find(parentID);
    if (particleMap.end() == pIter)
        throw cet::exception("LArPandora") << " PandoraCollector::GetParentNeutrino --- Found a PFParticle without a particle ID ";

    const art::Ptr<recob::PFParticle> neutrinoParticle = pIter->second;
    return neutrinoParticle->PdgCode();
}

//------------------------------------------------------------------------------------------------------------------------------------------

bool LArPandoraHelper::IsFinalState(const PFParticleMap &particleMap, const art::Ptr<recob::PFParticle> daughterParticle)
{
    if (LArPandoraHelper::IsNeutrino(daughterParticle))
        return false;

    if (daughterParticle->IsPrimary())
        return true;

    const int parentID(daughterParticle->Parent());

    PFParticleMap::const_iterator pIter = particleMap.find(parentID);
    if (particleMap.end() == pIter)
        throw cet::exception("LArPandora") << " PandoraCollector::IsFinalState --- Found a PFParticle without a particle ID ";

    const art::Ptr<recob::PFParticle> parentParticle = pIter->second;

    if (LArPandoraHelper::IsNeutrino(parentParticle))
        return true;

    return false;
}

//------------------------------------------------------------------------------------------------------------------------------------------

bool LArPandoraHelper::IsNeutrino(const art::Ptr<recob::PFParticle> particle)
{
    const int pdg(particle->PdgCode());

    // electron, muon, tau (use Pandora PDG tables)
    return ((pandora::NU_E == std::abs(pdg)) || (pandora::NU_MU == std::abs(pdg)) || (pandora::NU_TAU == std::abs(pdg)));
}

//------------------------------------------------------------------------------------------------------------------------------------------

bool LArPandoraHelper::IsTrack(const art::Ptr<recob::PFParticle> particle)
{
    const int pdg(particle->PdgCode());

    // muon, pion, proton, kaon (use Pandora PDG tables)
    return ((pandora::MU_MINUS == std::abs(pdg)) || (pandora::PI_PLUS == std::abs(pdg)) || (pandora::PROTON == std::abs(pdg)) ||
        (pandora::K_PLUS == std::abs(pdg)));
}

//------------------------------------------------------------------------------------------------------------------------------------------

bool LArPandoraHelper::IsShower(const art::Ptr<recob::PFParticle> particle)
{
    const int pdg(particle->PdgCode());

    // electron, photon (use Pandora PDG tables)
    return ((pandora::E_MINUS == std::abs(pdg)) || (pandora::PHOTON == std::abs(pdg)));
}

//------------------------------------------------------------------------------------------------------------------------------------------

bool LArPandoraHelper::IsVisible(const art::Ptr<simb::MCParticle> particle)
{
    // Include long-lived charged particles
    const int pdg(particle->PdgCode());

    if ((pandora::E_MINUS == std::abs(pdg)) || (pandora::MU_MINUS == std::abs(pdg)) || (pandora::PROTON == std::abs(pdg)) ||
        (pandora::PI_PLUS == std::abs(pdg)) || (pandora::K_PLUS == std::abs(pdg)) ||
        (pandora::SIGMA_MINUS == std::abs(pdg)) || (pandora::SIGMA_PLUS == std::abs(pdg)) || (pandora::HYPERON_MINUS == std::abs(pdg)) ||
        (pandora::PHOTON == std::abs(pdg)) || (pandora::NEUTRON == std::abs(pdg)))
        return true;

    // TODO: What about ions, neutrons, photons? (Have included neutrons and photons for now)

    return false;
}

//------------------------------------------------------------------------------------------------------------------------------------------

larpandoraobj::PFParticleMetadata LArPandoraHelper::GetPFParticleMetadata(const pandora::ParticleFlowObject *const pPfo)
{
        return larpandoraobj::PFParticleMetadata(pPfo->GetPropertiesMap());
}

//------------------------------------------------------------------------------------------------------------------------------------------
//------------------------------------------------------------------------------------------------------------------------------------------

template void LArPandoraHelper::GetAssociatedHits(const art::Event &, const std::string &, const std::vector<art::Ptr<recob::Cluster> > &,
    HitVector &, const pandora::IntVector* const);

template void LArPandoraHelper::GetAssociatedHits(const art::Event &, const std::string &, const std::vector<art::Ptr<recob::SpacePoint> > &,
    HitVector &, const pandora::IntVector* const);

} // namespace lar_pandora