PointIdEffTest_module.cc

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// Class:       PointIdEffTest
// Module Type: analyzer
// File:        PointIdEffTest_module.cc
//
// Author: dorota.stefan@cern.ch
//
// Generated at Fri Apr 29 06:42:27 2016 by Dorota Stefan using artmod
// from cetpkgsupport v1_10_01.

#include "larcoreobj/SimpleTypesAndConstants/PhysicalConstants.h"
#include "lardata/ArtDataHelper/MVAReader.h"
#include "lardata/DetectorInfoServices/DetectorClocksService.h"
#include "lardata/DetectorInfoServices/DetectorPropertiesService.h"
#include "lardata/Utilities/DatabaseUtil.h"
#include "lardataobj/RecoBase/Cluster.h"
#include "lardataobj/RecoBase/Hit.h"
#include "lardataobj/RecoBase/PFParticle.h"
#include "lardataobj/RecoBase/Track.h"
#include "lardataobj/RecoBase/Wire.h"
#include "lardataobj/Simulation/SimChannel.h"
#include "larreco/Calorimetry/CalorimetryAlg.h"
#include "larsim/Simulation/LArG4Parameters.h"
#include "nusimdata/SimulationBase/MCParticle.h"
#include "nusimdata/SimulationBase/MCTruth.h"

#include "art/Framework/Core/EDAnalyzer.h"
#include "art/Framework/Core/ModuleMacros.h"
#include "art/Framework/Principal/Event.h"
#include "art/Framework/Principal/Handle.h"
#include "art/Framework/Principal/Run.h"
#include "art/Framework/Principal/SubRun.h"
#include "art/Framework/Services/Registry/ServiceHandle.h"
#include "art_root_io/TFileService.h"
#include "canvas/Persistency/Common/FindManyP.h"
#include "canvas/Persistency/Common/Ptr.h"
#include "canvas/Utilities/InputTag.h"
#include "cetlib_except/exception.h"
#include "fhiclcpp/types/Atom.h"
#include "fhiclcpp/types/Comment.h"
#include "fhiclcpp/types/Name.h"
#include "fhiclcpp/types/Table.h"
#include "messagefacility/MessageLogger/MessageLogger.h"

#include "TH1.h"
#include "TTree.h"

#include <array>
#include <cmath>
#include <fstream>
#include <iostream>
#include <unordered_map>
#include <vector>

#define MVA_LENGTH 4

namespace nnet {

  class PointIdEffTest : public art::EDAnalyzer {
  public:
    enum EId { kShower = 0, kTrack = 1, kMichel = 2 };

    struct Config {
      using Name = fhicl::Name;
      using Comment = fhicl::Comment;

      fhicl::Table<calo::CalorimetryAlg::Config> CalorimetryAlg{
        Name("CalorimetryAlg"),
        Comment("Used to calculate electron lifetime correction.")};

      fhicl::Atom<art::InputTag> SimModuleLabel{Name("SimModuleLabel"),
                                                Comment("Simulation producer")};

      fhicl::Atom<art::InputTag> PfpModuleLabel{
        Name("PfpModuleLabel"),
        Comment("PFP producer tag, to compare with NNet results")};

      fhicl::Atom<art::InputTag> NNetModuleLabel{Name("NNetModuleLabel"),
                                                 Comment("NNet outputs tag")};

      fhicl::Atom<bool> SaveHitsFile{Name("SaveHitsFile"), Comment("Dump hits info to text file")};

      fhicl::Atom<unsigned int> View{Name("View"), Comment("Which view is evaluated")};
    };
    using Parameters = art::EDAnalyzer::Table<Config>;

    explicit PointIdEffTest(Parameters const& config);

    PointIdEffTest(PointIdEffTest const&) = delete;
    PointIdEffTest(PointIdEffTest&&) = delete;
    PointIdEffTest& operator=(PointIdEffTest const&) = delete;
    PointIdEffTest& operator=(PointIdEffTest&&) = delete;

  private:
    void beginRun(const art::Run& run) override;
    void beginJob() override;
    void endJob() override;
    void analyze(art::Event const& e) override;

    void cleanup();

    void countTruthDep(const std::vector<sim::SimChannel>& channels,
                       float& emLike,
                       float& trackLike) const;

    void countPfpDep(detinfo::DetectorClocksData const& clockData,
                     detinfo::DetectorPropertiesData const& detProp,
                     const std::vector<recob::PFParticle>& pfparticles,
                     const art::FindManyP<recob::Cluster>& pfpclus,
                     const art::FindManyP<recob::Hit>& cluhits,
                     float& emLike,
                     float& trackLike) const;

    bool isMuonDecaying(const simb::MCParticle& particle,
                        const std::unordered_map<int, const simb::MCParticle*>& particleMap) const;

    int testCNN(detinfo::DetectorClocksData const& clockData,
                detinfo::DetectorPropertiesData const& detProp,
                const std::vector<sim::SimChannel>& channels,
                const std::vector<art::Ptr<recob::Hit>>& hits,
                const std::array<float, MVA_LENGTH>& cnn_out,
                const std::vector<anab::FeatureVector<MVA_LENGTH>>& hit_outs,
                size_t cidx);

    int fRun, fEvent;
    float fMcDepEM, fMcDepTrack, fMcFractionEM;
    float fPfpDepEM, fPfpDepTrack;
    float fHitEM_0p5, fHitTrack_0p5, fHitMichel_0p5, fHitMcFractionEM;
    float fHitEM_mc, fpEM;
    float fHitMichel_mc, fpMichel_hit, fpMichel_cl;
    float fOutTrk, fOutEM, fOutNone;
    float fHitEM_0p85, fHitTrack_0p85;
    float fTotHit, fCleanHit;

    //const int kEffSize = 100;
    float fHitsEM_OK_0p5[100], fHitsTrack_OK_0p5[100];
    float fHitsMichel_OK_0p5[100], fHitsMichel_False_0p5[100];
    float fHitsEM_OK_0p85[100], fHitsTrack_OK_0p85[100];
    float fHitRecoEM[100], fHitRecoFractionEM[100];

    int fMcPid;
    int fClSize;
    float fPidValue; // P(track-like)

    int fTrkOk[100], fTrkBad[100];
    int fShOk[100], fShBad[100];
    int fNone, fTotal;

    double fElectronsToGeV;

    int fTrkLikeIdx, fEmLikeIdx, fNoneIdx, fMichelLikeIdx;

    TTree *fEventTree, *fClusterTree, *fHitTree;

    std::ofstream fHitsOutFile;

    unsigned int fView;

    std::unordered_map<int, const simb::MCParticle*> fParticleMap;

    calo::CalorimetryAlg fCalorimetryAlg;
    art::InputTag fSimulationProducerLabel;
    art::InputTag fPfpModuleLabel;
    art::InputTag fNNetModuleLabel;
    bool fSaveHitsFile;
  };

} // namespace nnet

nnet::PointIdEffTest::PointIdEffTest(nnet::PointIdEffTest::Parameters const& config)
  : art::EDAnalyzer(config)
  , fMcPid(-1)
  , fClSize(0)
  , fTrkLikeIdx(-1)
  , fEmLikeIdx(-1)
  , fNoneIdx(-1)
  , fMichelLikeIdx(-1)
  , fView(config().View())
  , fCalorimetryAlg(config().CalorimetryAlg())
  , fSimulationProducerLabel(config().SimModuleLabel())
  , fPfpModuleLabel(config().PfpModuleLabel())
  , fNNetModuleLabel(config().NNetModuleLabel())
  , fSaveHitsFile(config().SaveHitsFile())
{}

void nnet::PointIdEffTest::beginRun(const art::Run&)
{
  art::ServiceHandle<sim::LArG4Parameters const> larParameters;
  fElectronsToGeV = 1. / larParameters->GeVToElectrons();
}

void nnet::PointIdEffTest::beginJob()
{
  art::ServiceHandle<art::TFileService const> tfs;

  fEventTree = tfs->make<TTree>("event", "event info");
  fEventTree->Branch("fRun", &fRun, "fRun/I");
  fEventTree->Branch("fEvent", &fEvent, "fEvent/I");
  fEventTree->Branch("fMcDepEM", &fMcDepEM, "fMcDepEM/F");
  fEventTree->Branch("fMcDepTrack", &fMcDepTrack, "fMcDepTrack/F");
  fEventTree->Branch("fMcFractionEM", &fMcFractionEM, "fMcFractionEM/F");
  fEventTree->Branch("fPfpDepEM", &fPfpDepEM, "fPfpDepEM/F");
  fEventTree->Branch("fPfpDepTrack", &fPfpDepTrack, "fPfpDepTrack/F");
  fEventTree->Branch("fHitEM_0p5", &fHitEM_0p5, "fHitEM_0p5/F");
  fEventTree->Branch("fHitMichel_0p5", &fHitMichel_0p5, "fHitMichel_0p5/F");
  fEventTree->Branch("fHitTrack_0p5", &fHitTrack_0p5, "fHitTrack_0p5/F");
  fEventTree->Branch("fHitMcFractionEM", &fHitMcFractionEM, "fHitMcFractionEM/F");
  fEventTree->Branch("fHitEM_0p85", &fHitEM_0p85, "fHitEM_0p85/F");
  fEventTree->Branch("fHitTrack_0p85", &fHitTrack_0p85, "fHitTrack_0p85/F");
  fEventTree->Branch("fCleanHit", &fCleanHit, "fCleanHit/F");

  fEventTree->Branch("fHitsEM_OK_0p5", fHitsEM_OK_0p5, "fHitsEM_OK_0p5[100]/F");
  fEventTree->Branch("fHitsTrack_OK_0p5", fHitsTrack_OK_0p5, "fHitsTrack_OK_0p5[100]/F");
  fEventTree->Branch("fHitsMichel_OK_0p5", fHitsMichel_OK_0p5, "fHitsMichel_OK_0p5[100]/F");
  fEventTree->Branch(
    "fHitsMichel_False_0p5", fHitsMichel_False_0p5, "fHitsMichel_False_0p5[100]/F");

  fEventTree->Branch("fHitsEM_OK_0p85", fHitsEM_OK_0p85, "fHitsEM_OK_0p85[100]/F");
  fEventTree->Branch("fHitsTrack_OK_0p85", fHitsTrack_OK_0p85, "fHitsTrack_OK_0p85[100]/F");

  fEventTree->Branch("fHitRecoEM", fHitRecoEM, "fHitRecoEM[100]/F");
  fEventTree->Branch("fHitRecoFractionEM", fHitRecoFractionEM, "fHitRecoFractionEM[100]/F");

  fClusterTree = tfs->make<TTree>("cluster", "clusters info");
  fClusterTree->Branch("fMcPid", &fMcPid, "fMcPid/I");
  fClusterTree->Branch("fClSize", &fClSize, "fClSize/I");
  fClusterTree->Branch("fPidValue", &fPidValue, "fPidValue/F");
  fClusterTree->Branch("fpMichel_cl", &fpMichel_cl, "fpMichel_cl/F");

  fHitTree = tfs->make<TTree>("hits", "hits info");
  fHitTree->Branch("fRun", &fRun, "fRun/I");
  fHitTree->Branch("fEvent", &fEvent, "fEvent/I");
  fHitTree->Branch("fHitEM_mc", &fHitEM_mc, "fHitEM_mc/F");
  fHitTree->Branch("fpEM", &fpEM, "fpEM/F");
  fHitTree->Branch("fPidValue", &fPidValue, "fPidValue/F");
  fHitTree->Branch("fHitMichel_mc", &fHitMichel_mc, "fHitMichel_mc/F");
  fHitTree->Branch("fpMichel_hit", &fpMichel_hit, "fpMichel_hit/F");
  fHitTree->Branch("fOutTrk", &fOutTrk, "fOutTrk/F");
  fHitTree->Branch("fOutEM", &fOutEM, "fOutEM/F");
  fHitTree->Branch("fOutNone", &fOutNone, "fOutNone/F");

  if (fSaveHitsFile) fHitsOutFile.open("hits_pid.prn");

  fNone = 0;
  fTotal = 0;
  for (size_t i = 0; i < 100; ++i) {
    fShOk[i] = 0;
    fShBad[i] = 0;
    fTrkOk[i] = 0;
    fTrkBad[i] = 0;
  }
}

void nnet::PointIdEffTest::endJob()
{
  if (fSaveHitsFile) fHitsOutFile.close();

  art::ServiceHandle<art::TFileService const> tfs;

  TTree* thrTree = tfs->make<TTree>("threshold", "error rate vs threshold");

  float thr, shErr, trkErr;
  thrTree->Branch("thr", &thr, "thr/F");
  thrTree->Branch("shErr", &shErr, "shErr/F");
  thrTree->Branch("trkErr", &trkErr, "trkErr/F");

  for (size_t i = 0; i < 100; ++i) {
    thr = 0.01 * i;
    shErr = fShBad[i] / float(fShBad[i] + fShOk[i]);
    trkErr = fTrkBad[i] / float(fTrkBad[i] + fTrkOk[i]);
    thrTree->Fill();
  }
}

void nnet::PointIdEffTest::cleanup()
{
  fParticleMap.clear();

  fMcDepEM = 0;
  fMcDepTrack = 0;
  fMcFractionEM = 0;
  fPfpDepEM = 0;
  fPfpDepTrack = 0;
  fHitEM_0p5 = 0;
  fHitTrack_0p5 = 0;
  fHitEM_0p85 = 0;
  fHitTrack_0p85 = 0;
  fHitMichel_0p5 = 0;
  fHitMcFractionEM = 0;
  fTotHit = 0;
  fCleanHit = 0;

  for (size_t i = 0; i < 100; ++i) {
    fHitsEM_OK_0p5[i] = 0;
    fHitsTrack_OK_0p5[i] = 0;
    fHitsEM_OK_0p85[i] = 0;
    fHitsTrack_OK_0p85[i] = 0;
    fHitsMichel_OK_0p5[i] = 0;
    fHitsMichel_False_0p5[i] = 0;
    fHitRecoEM[i] = 0;
    fHitRecoFractionEM[i] = 0;
  }

  fTrkLikeIdx = -1;
  fEmLikeIdx = -1;
  fNoneIdx = -1;
  fMichelLikeIdx = -1;
}

void nnet::PointIdEffTest::analyze(art::Event const& e)
{
  cleanup(); // remove everything from members

  fRun = e.run();
  fEvent = e.id().event();

  // access to MC information

  // MC particles list
  auto particleHandle = e.getValidHandle<std::vector<simb::MCParticle>>(fSimulationProducerLabel);
  for (auto const& particle : *particleHandle) {
    fParticleMap[particle.TrackId()] = &particle;
  }

  // SimChannels
  auto simChannelHandle = e.getValidHandle<std::vector<sim::SimChannel>>(fSimulationProducerLabel);
  countTruthDep(*simChannelHandle, fMcDepEM, fMcDepTrack);

  auto const clockData = art::ServiceHandle<detinfo::DetectorClocksService const>()->DataFor(e);
  auto const detProp =
    art::ServiceHandle<detinfo::DetectorPropertiesService const>()->DataFor(e, clockData);

  // PFParticle selection results
  art::Handle<std::vector<recob::PFParticle>> pfpHandle;
  if (e.getByLabel(fPfpModuleLabel, pfpHandle)) {
    auto cluHandle = e.getValidHandle<std::vector<recob::Cluster>>(fPfpModuleLabel);
    const art::FindManyP<recob::Cluster> clusFromPfps(pfpHandle, e, fPfpModuleLabel);
    const art::FindManyP<recob::Hit> hitsFromClus(cluHandle, e, fPfpModuleLabel);
    countPfpDep(
      clockData, detProp, *pfpHandle, clusFromPfps, hitsFromClus, fPfpDepEM, fPfpDepTrack);
  }

  // output from cnn's

  anab::MVAReader<recob::Hit, MVA_LENGTH> hitResults(
    e, fNNetModuleLabel); // hit-by-hit outpus just to be dumped to file for debugging
  fTrkLikeIdx = hitResults.getIndex("track");
  fEmLikeIdx = hitResults.getIndex("em");
  fNoneIdx = hitResults.getIndex("none");
  fMichelLikeIdx = hitResults.getIndex("michel");
  if ((fTrkLikeIdx < 0) || (fEmLikeIdx < 0)) {
    throw cet::exception("PointIdEffTest")
      << "No em/track labeled columns in MVA data products." << std::endl;
  }

  auto cluResults = anab::MVAReader<recob::Cluster, MVA_LENGTH>::create(
    e, fNNetModuleLabel); // outputs for clusters recovered in not-throwing way
  if (cluResults) {
    const art::FindManyP<recob::Hit> hitsFromClusters(
      cluResults->dataHandle(), e, cluResults->dataTag());

    for (size_t c = 0; c < cluResults->size(); ++c) {
      const recob::Cluster& clu = cluResults->item(c);

      if (clu.Plane().Plane != fView) continue;

      const std::vector<art::Ptr<recob::Hit>>& hits = hitsFromClusters.at(c);
      std::array<float, MVA_LENGTH> cnn_out = cluResults->getOutput(c);

      testCNN(clockData,
              detProp,
              *simChannelHandle,
              hits,
              cnn_out,
              hitResults.outputs(),
              c); // test hits in the cluster
    }

    if (fTotHit > 0)
      fCleanHit = fCleanHit / fTotHit;
    else
      fCleanHit = 0;

    double totMcDep = fMcDepEM + fMcDepTrack;
    if (totMcDep)
      fMcFractionEM = fMcDepEM / totMcDep;
    else
      fMcFractionEM = 0;

    double totEmTrk0p5 = fHitEM_0p5 + fHitTrack_0p5;
    if (totEmTrk0p5 > 0)
      fHitMcFractionEM = fHitEM_0p5 / totEmTrk0p5;
    else
      fHitMcFractionEM = 0;

    for (size_t i = 0; i < 100; ++i) {
      if (fHitEM_0p5 > 0)
        fHitsEM_OK_0p5[i] /= fHitEM_0p5;
      else
        fHitsEM_OK_0p5[i] = 0;

      if (fHitTrack_0p5 > 0)
        fHitsTrack_OK_0p5[i] /= fHitTrack_0p5;
      else
        fHitsTrack_OK_0p5[i] = 0;

      if (fHitEM_0p85 > 0)
        fHitsEM_OK_0p85[i] /= fHitEM_0p85;
      else
        fHitsEM_OK_0p85[i] = 0;

      if (fHitTrack_0p85 > 0)
        fHitsTrack_OK_0p85[i] /= fHitTrack_0p85;
      else
        fHitsTrack_OK_0p85[i] = 0;

      if (totEmTrk0p5 > 0)
        fHitRecoFractionEM[i] = fHitRecoEM[i] / totEmTrk0p5;
      else
        fHitRecoFractionEM[i] = 0;
    }

    fEventTree->Fill();
  }
  else {
    mf::LogWarning("TrainingDataAlg") << "MVA FOR CLUSTERS NOT FOUND";
  }

  cleanup(); // remove everything from members
}
/******************************************/

void nnet::PointIdEffTest::countTruthDep(const std::vector<sim::SimChannel>& channels,
                                         float& emLike,
                                         float& trackLike) const
{
  emLike = 0;
  trackLike = 0;
  for (auto const& channel : channels) {
    // for every time slice in this channel:
    auto const& timeSlices = channel.TDCIDEMap();
    for (auto const& timeSlice : timeSlices) {
      // loop over the energy deposits.
      auto const& energyDeposits = timeSlice.second;
      for (auto const& energyDeposit : energyDeposits) {
        int trackID = energyDeposit.trackID;

        double energy = energyDeposit.numElectrons * fElectronsToGeV * 1000;

        if (trackID < 0) { emLike += energy; }
        else if (trackID > 0) {
          auto search = fParticleMap.find(trackID);
          bool found = true;
          if (search == fParticleMap.end()) {
            mf::LogWarning("TrainingDataAlg") << "PARTICLE NOT FOUND";
            found = false;
          }

          int pdg = 0;
          if (found) {
            const simb::MCParticle& particle = *((*search).second);
            if (!pdg) pdg = particle.PdgCode(); // not EM activity so read what PDG it is
          }

          if ((pdg == 11) || (pdg == -11) || (pdg == 22))
            emLike += energy;
          else
            trackLike += energy;
        }
      }
    }
  }
}
/******************************************/

void nnet::PointIdEffTest::countPfpDep(detinfo::DetectorClocksData const& clockData,
                                       detinfo::DetectorPropertiesData const& detProp,
                                       const std::vector<recob::PFParticle>& pfparticles,
                                       const art::FindManyP<recob::Cluster>& pfpclus,
                                       const art::FindManyP<recob::Hit>& cluhits,
                                       float& emLike,
                                       float& trackLike) const
{
  emLike = 0;
  trackLike = 0;
  for (size_t i = 0; i < pfparticles.size(); ++i) {
    const auto& pfp = pfparticles[i];
    const auto& clus = pfpclus.at(i);

    float hitdep = 0;
    for (const auto& c : clus) {
      const auto& hits = cluhits.at(c.key());
      for (const auto& h : hits) {
        if (h->View() == fView) {
          hitdep +=
            h->SummedADC() * fCalorimetryAlg.LifetimeCorrection(clockData, detProp, h->PeakTime());
        }
      }
    }

    if ((pfp.PdgCode() == 11) || pfp.PdgCode() == -11) { emLike += hitdep; }
    else {
      trackLike += hitdep;
    }
  }
}
/******************************************/

bool nnet::PointIdEffTest::isMuonDecaying(
  const simb::MCParticle& particle,
  const std::unordered_map<int, const simb::MCParticle*>& particleMap) const
{
  bool hasElectron = false, hasNuMu = false, hasNuE = false;

  int pdg = abs(particle.PdgCode());
  if ((pdg == 13) && (particle.EndProcess() == "FastScintillation")) // potential muon decay at rest
  {
    unsigned int nSec = particle.NumberDaughters();
    for (size_t d = 0; d < nSec; ++d) {
      auto d_search = particleMap.find(particle.Daughter(d));
      if (d_search != particleMap.end()) {
        auto const& daughter = *((*d_search).second);
        int d_pdg = abs(daughter.PdgCode());
        if (d_pdg == 11)
          hasElectron = true;
        else if (d_pdg == 14)
          hasNuMu = true;
        else if (d_pdg == 12)
          hasNuE = true;
      }
    }
  }

  return (hasElectron && hasNuMu && hasNuE);
}
/******************************************/

int nnet::PointIdEffTest::testCNN(detinfo::DetectorClocksData const& clockData,
                                  detinfo::DetectorPropertiesData const& detProp,
                                  const std::vector<sim::SimChannel>& channels,
                                  const std::vector<art::Ptr<recob::Hit>>& hits,
                                  const std::array<float, MVA_LENGTH>& cnn_out,
                                  const std::vector<anab::FeatureVector<MVA_LENGTH>>& hit_outs,
                                  size_t cidx)
{
  fClSize = hits.size();

  std::unordered_map<int, int> mcHitPid;

  fPidValue = 0;
  double p_trk_or_sh = cnn_out[fTrkLikeIdx] + cnn_out[fEmLikeIdx];
  if (p_trk_or_sh > 0) { fPidValue = cnn_out[fTrkLikeIdx] / p_trk_or_sh; }

  double p_michel = 0;
  if (fMichelLikeIdx >= 0) { fpMichel_cl = cnn_out[fMichelLikeIdx]; }

  double totEnSh = 0, totEnTrk = 0;
  for (auto const& hit : hits) {
    // the channel associated with this hit.
    auto hitChannelNumber = hit->Channel();

    double hitEn = 0, hitEnSh = 0, hitEnTrk = 0, hitEnMichel = 0;

    auto const& vout = hit_outs[hit.key()];
    fOutTrk = vout[fTrkLikeIdx];
    fOutEM = vout[fEmLikeIdx];
    if (fNoneIdx >= 0) { fOutNone = vout[fNoneIdx]; }
    if (fMichelLikeIdx >= 0) { p_michel = vout[fMichelLikeIdx]; }

    for (auto const& channel : channels) {
      if (channel.Channel() != hitChannelNumber) continue;

      // for every time slice in this channel:
      auto const& timeSlices = channel.TDCIDEMap();
      for (auto const& timeSlice : timeSlices) {
        int time = timeSlice.first;
        if (std::abs(hit->TimeDistanceAsRMS(time)) < 1.0) {
          // loop over the energy deposits.
          auto const& energyDeposits = timeSlice.second;

          for (auto const& energyDeposit : energyDeposits) {
            int trackID = energyDeposit.trackID;

            double energy = energyDeposit.numElectrons * fElectronsToGeV * 1000;
            hitEn += energy;

            if (trackID < 0) { hitEnSh += energy; } // EM activity
            else if (trackID > 0) {
              auto search = fParticleMap.find(trackID);
              if (search != fParticleMap.end()) {
                const simb::MCParticle& particle = *((*search).second);
                int pdg = particle.PdgCode(); // not EM activity so read what PDG it is

                if ((pdg == 11) || (pdg == -11) || (pdg == 22))
                  hitEnSh += energy;
                else
                  hitEnTrk += energy;

                if (pdg == 11) // electron, check if it is Michel
                {
                  auto msearch = fParticleMap.find(particle.Mother());
                  if (msearch != fParticleMap.end()) {
                    auto const& mother = *((*msearch).second);
                    if (isMuonDecaying(mother, fParticleMap)) { hitEnMichel += energy; }
                  }
                }
              }
              else {
                mf::LogWarning("TrainingDataAlg") << "PARTICLE NOT FOUND";
              }
            }
          }
        }
      }
    }
    totEnSh += hitEnSh;
    totEnTrk += hitEnTrk;

    double hitAdc =
      hit->SummedADC() * fCalorimetryAlg.LifetimeCorrection(clockData, detProp, hit->PeakTime());
    fTotHit += hitAdc;

    int hitPidMc_0p5 = -1;
    if (hitEnSh > hitEnTrk) {
      fHitEM_0p5 += hitAdc;
      hitPidMc_0p5 = nnet::PointIdEffTest::kShower;
    }
    else {
      fHitTrack_0p5 += hitAdc;
      hitPidMc_0p5 = nnet::PointIdEffTest::kTrack;
    }
    mcHitPid[hit.key()] = hitPidMc_0p5;
    auto const& hout = hit_outs[hit.key()];
    fpEM = 0;
    float hit_trk_or_sh = hout[fTrkLikeIdx] + hout[fEmLikeIdx];
    if (hit_trk_or_sh > 0) fpEM = hout[fEmLikeIdx] / hit_trk_or_sh;
    fHitEM_mc = hitEnSh / (hitEnSh + hitEnTrk);

    int hitPidMc_0p85 = -1;
    double hitDep = hitEnSh + hitEnTrk;
    if (hitEnSh > 0.85 * hitDep) {
      fHitEM_0p85 += hitAdc;
      fCleanHit += hitAdc;
      hitPidMc_0p85 = nnet::PointIdEffTest::kShower;
    }
    else if (hitEnTrk > 0.85 * hitDep) {
      fHitTrack_0p85 += hitAdc;
      fCleanHit += hitAdc;
      hitPidMc_0p85 = nnet::PointIdEffTest::kTrack;
    }

    bool mcMichel = false;
    fpMichel_hit = p_michel;
    fHitMichel_mc = hitEnMichel / hitEn;
    if (fHitMichel_mc > 0.5) {
      fHitMichel_0p5 += hitAdc;
      mcMichel = true;
    }

    fHitTree->Fill();

    for (size_t i = 0; i < 100; ++i) {
      double thr = 0.01 * i;

      if (p_michel > thr) {
        if (mcMichel) { fHitsMichel_OK_0p5[i] += hitAdc; }
        else {
          fHitsMichel_False_0p5[i] += hitAdc;
        }
      }

      int recoPid = -1;
      if (fPidValue < thr) {
        recoPid = nnet::PointIdEffTest::kShower;
        fHitRecoEM[i] += hitAdc;
      }
      else
        recoPid = nnet::PointIdEffTest::kTrack;

      if ((recoPid == nnet::PointIdEffTest::kShower) &&
          (hitPidMc_0p5 == nnet::PointIdEffTest::kShower)) {
        fHitsEM_OK_0p5[i] += hitAdc;
      }
      else if ((recoPid == nnet::PointIdEffTest::kTrack) &&
               (hitPidMc_0p5 == nnet::PointIdEffTest::kTrack)) {
        fHitsTrack_OK_0p5[i] += hitAdc;
      }

      if ((recoPid == nnet::PointIdEffTest::kShower) &&
          (hitPidMc_0p85 == nnet::PointIdEffTest::kShower)) {
        fHitsEM_OK_0p85[i] += hitAdc;
      }
      else if ((recoPid == nnet::PointIdEffTest::kTrack) &&
               (hitPidMc_0p85 == nnet::PointIdEffTest::kTrack)) {
        fHitsTrack_OK_0p85[i] += hitAdc;
      }
    }
  }

  // ************ count clusters *************

  fMcPid = -1;
  if (totEnSh > 1.5 * totEnTrk) // major energy deposit from EM activity
  {
    fMcPid = nnet::PointIdEffTest::kShower;
  }
  else if (totEnTrk > 1.5 * totEnSh) {
    fMcPid = nnet::PointIdEffTest::kTrack;
  }

  for (size_t i = 0; i < 100; ++i) {
    double thr = 0.01 * i;

    int recoPid = -1;
    if (fPidValue < thr)
      recoPid = nnet::PointIdEffTest::kShower;
    else
      recoPid = nnet::PointIdEffTest::kTrack;

    if ((recoPid == nnet::PointIdEffTest::kShower) && (fMcPid == nnet::PointIdEffTest::kShower)) {
      fShOk[i] += fClSize;
    }
    else if ((recoPid == nnet::PointIdEffTest::kTrack) &&
             (fMcPid == nnet::PointIdEffTest::kTrack)) {
      fTrkOk[i] += fClSize;
    }
    else if ((recoPid == nnet::PointIdEffTest::kShower) &&
             (fMcPid == nnet::PointIdEffTest::kTrack)) {
      fTrkBad[i] += fClSize;
    }
    else if ((recoPid == nnet::PointIdEffTest::kTrack) &&
             (fMcPid == nnet::PointIdEffTest::kShower)) {
      fShBad[i] += fClSize;
    }
    else {
      fNone++;
    }
  }
  fTotal++;

  if (fSaveHitsFile) {
    for (auto const& h : hits) {
      auto const& vout = hit_outs[h.key()];
      double hitPidValue = 0;
      double h_trk_or_sh = vout[fTrkLikeIdx] + vout[fEmLikeIdx];
      if (h_trk_or_sh > 0) hitPidValue = vout[fTrkLikeIdx] / h_trk_or_sh;

      fHitsOutFile << fRun << " " << fEvent << " " << h->WireID().TPC << " " << h->WireID().Wire
                   << " " << h->PeakTime() << " "
                   << h->SummedADC() *
                        fCalorimetryAlg.LifetimeCorrection(clockData, detProp, h->PeakTime())
                   << " " << mcHitPid[h.key()] << " " << fPidValue << " " << hitPidValue;

      if (fMichelLikeIdx >= 0) {
        fHitsOutFile << " " << vout[fMichelLikeIdx]; // is michel?
      }

      fHitsOutFile << " " << cidx << std::endl;
    }
  }

  fClusterTree->Fill();
  return fMcPid;
}
/******************************************/

DEFINE_ART_MODULE(nnet::PointIdEffTest)