fragmentAngularDistributionGM.C

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#include "Riostream.h"
#include "TSystem.h"
#include "TInterpreter.h"
#include "TROOT.h"
#include "TApplication.h"
#include "TFile.h"
#include "TNtuple.h"
#include "TCanvas.h"
#include "TH1F.h"
#include "THStack.h"
#include "TCut.h"
#include "TString.h"
#include "TMath.h"

/***************************
 * Root script that produces a graph of the angular distribution of
 * a certain type of charged fragment (default Z=1).
 * 
 * Results are not stored in a histogram.
 * 
 * This can be compared to measurements made with a square 
 * detector that is being moved around. Such as that of E.Haettner[1].
 * 
 * Results are normalized to the 0-angle because documentation on E.Haettner's 
 * normalization is not found.
 * 
 * @author Gillis Danielsen
 * **************************/


void fragmentAngularDistributionGM() {

        TCanvas *c1 = new TCanvas("AngularDistribution", "Angular distribution with discrete measurement annuluses");
        
  gROOT->SetStyle("clearRetro");
 //this will be used as base for pulling the experimental data
   TString dir = gSystem->UnixPathName(gInterpreter->GetCurrentMacroName());
   ifstream in;

   //Settings for analysis
   TString pDepth = "5.9"; //set ehre what depth to analyse, requries suitable root file and data file
   TString fragment = "H"; //string of what fragment is being looked at H, He, Li ...
   TString Anum = "1"; //set here what will be put in the selection for z, does not automatically change imoprted data.
   //TString experimentalDataFile = "experimentalData/iaeaBenchmark/angularDistributions/" + pDepth + "/" + fragment + pDepth + ".dat";
   //in.open(Form("experimentalData/iaeaBenchmark/angularDistributions/" + pDepth + "/" + fragment + pDepth + ".dat",dir.Data()));
   in.open(Form("experimentalData/iaeaBenchmark/alternativeGMBeamAD.dat",dir.Data())); //fixme: redundant dir.data()
   std::cout << "experimentalData/iaeaBenchmark/angularDistributions/" + pDepth + "/" + fragment + pDepth + ".dat" << endl;
   std::cout << "didata" << dir.Data() << endl;
   Float_t f1,f2;
   Int_t nlines = 0;
   TFile *f = new TFile("fragmentAngularDistribution.root","RECREATE");
   TNtuple *ntuple = new TNtuple("ntuple","Data from ascii file","x:y");
          
   Char_t DATAFLAG[4];
   Int_t NDATA;
   Char_t n1[15], n2[15];
   in >> DATAFLAG >> NDATA ; // Read EXFOR line: 'DATA 6'
   in >> n1 >> n2; // Read  column titles: 'Energy He B [...]'

   cout <<n1<<"   "<<n2<<"\n";
   while (1) {
      in >> f1 >> f2;
      if (!in.good()) break;
      if (nlines < 500 ) printf("%f %f\n",f1,f2);
      ntuple->Fill(f1,f2);
      nlines++;
   }
   std::cout << "Imported " << nlines << " lines from data-file" << endl;

   //Let's pull in the simulation-data
   //TFile *MCData = TFile::Open("IAEA_" + pDepth + ".root");
   TFile *MCData = TFile::Open("IAEA_G-M.root");
   TNtuple *fragments = (TNtuple*) MCData->Get("fragmentNtuple");

   //Block bellow pulls out the simulation's metadata from the metadata ntuple.
   TNtuple *metadata = (TNtuple*) MCData->Get("metaData");
   Float_t events, detectorDistance,waterThickness,beamEnergy,energyError,phantomCenterDistance;
   metadata->SetBranchAddress("events",&events);
   metadata->SetBranchAddress("waterThickness",&waterThickness);
   metadata->SetBranchAddress("detectorDistance",&detectorDistance);
   metadata->SetBranchAddress("beamEnergy",&beamEnergy);
   metadata->SetBranchAddress("energyError",&energyError);
   metadata->SetBranchAddress("phantomCenterDistance",&phantomCenterDistance);
   metadata->GetEntry(0); //there is just one row to consider.
   
        //good to keep for ref. G4 might give weird units due to change.
        metadata->Scan();
        
        //ALL UNITS ARE cm!
        Double_t detectorSideLength = 4; //40mm, as e.haettner H1 detector, G-M uses 1.6cm sidelength (which is however to small for < 1 million events files
        Double_t scatteringDistance = detectorDistance - phantomCenterDistance; //temporarily hard-coded, should be distance from target-center to detector

        Double_t r;
        Double_t degrees;
        Double_t rMin;
        Double_t rMax;
        TString rMinString;
        TString rMaxString;
        Double_t maxValue = 0.0; //When normalizing to 1 this will allways end up being 1)
        
        int i = 0; //so that the degree steps can be varied to unevenly spaced values separate counter is used
        TNtuple* distrib = new TNtuple("angularDistrib","FragmentAngularDistrib","angle:particleAmount:normalized");
        std::cout << "Fragments comparison to the graphs in appendices of E.Haettner\n";
        std::cout << "Scattering distance: " << scatteringDistance << " cm" << endl ;
        std::cout << "(scattering distance may vary with data-files too, see haettner A.1." << endl << endl;
        //This will norm it to the zero degree entry to get rid of Emma's weird normalization
        //fixme detectorsidelengthstring
        rMinString = "0.00";
        rMaxString = Form("%f", detectorSideLength/2);
        //SA of a square Double_t zeroSAsquare = 4 * TMath::ASin(pow(detectorSideLength,2.0) / (4*pow(scatteringDistance,2) + pow(detectorSideLength,2)) );
        //SA with square approx squareApprox = (4*4) / (4*3.14*scatteringDistance*scatteringDistance);
        
        //First calculates the normalization from the zero position
        //Normalization by events becomes redundant but is left in place for future needs

        Double_t deltaPhi = TMath::ATan((detectorSideLength/2)/scatteringDistance); //Angle where side of detector is found
        /*
        //Alternative normalization, here zero position is also done with annulus where rMin=0, the actual detector is a square though
        //Difference with this approach and the other is very small
        Double_t normEntries = fragments->GetEntries("(Z == " + Anum + " && energy > 0 && sqrt(posY^2 + posZ^2) < " + rMaxString + "&& sqrt(posY*posY + posZ*posZ) > " + rMinString + ")");
        Double_t zeroSA = 2*TMath::Pi()*(TMath::Cos(0) - TMath::Cos(deltaPhi));
        */
        //fragments->Scan();
        //Results are normalized by a square detector mimicing H1 with center at 0 degrees.
        Double_t normEntries = fragments->GetEntries("(A == " + Anum + " && posY < " + rMaxString + " && posY > -" + rMaxString + " &&  posZ > -" + rMaxString + " && posZ < " + rMaxString + ")");
        Double_t zeroSA = 4 * TMath::ASin(pow(detectorSideLength,2.0) / (4*pow(scatteringDistance,2) + pow(detectorSideLength,2)) );
        Double_t zeroNorm = normEntries / (events * zeroSA);
        distrib->Fill(0,normEntries,zeroNorm); //< degrees, entyamount, normalized result for graph
        //fragments->Scan();
        std::cout << "Norming events: " << normEntries << endl;
        //Loop through all other wanted angles, too large angles will fall outside reach of phantom window.
        for(Double_t j = deltaPhi*TMath::RadToDeg(); j <= 15.0; j=j+.05){
                i++;
                degrees = j * TMath::DegToRad();
                //Distance from straight beam at the requested angle
                r = scatteringDistance * TMath::Tan(degrees);
                //now the "detector is rotated around all possible perpendicularlynangle values to beamline".
                //This forms an annulus with rMin and Rmax as outer and inner radiuses
                //this will give a bit of approximation at small angles and at 0 degrees this gives a completely round sensor.
                Double_t deltaPhi = TMath::ATan((TMath::Cos(degrees)*detectorSideLength)/(2*scatteringDistance));
                rMin = TMath::Max(0.0,r - (detectorSideLength/(2*TMath::Cos(degrees))));
                rMax = rMin + ((detectorSideLength*TMath::Sin(degrees))/TMath::Tan((TMath::Pi()/2) - degrees - deltaPhi)) + (detectorSideLength*TMath::Cos(degrees));
                rMinString = Form("%f", rMin);
                rMaxString = Form("%f", rMax);          /*
                * From Gunzert-marx. Solid angle of annulus with rmin trmax, 
                * a bit of an aproximation especially at small phi.
                */
                Double_t deltaOmega = 2*TMath::Pi()*(TMath::Cos(TMath::Max(0.0,degrees-deltaPhi)) - TMath::Cos(degrees+deltaPhi));
                int numEntries = fragments->GetEntries("(A == " + Anum + " && sqrt(posY^2 + posZ^2) < " + rMaxString + "&& sqrt(posY*posY + posZ*posZ) > " + rMinString + ")");
                //distrib->Fill(j,numEntries,numEntries/(deltaOmega * events * zeroNorm)); //< degrees, entyamount, normalized result for graph
                distrib->Fill(j,numEntries,numEntries/(deltaOmega * events));
                //distrib->Fill(-j,numEntries,numEntries/(deltaOmega * events * zeroNorm)); //< To get gaussian shape better visible
                distrib->Fill(-j,numEntries,numEntries/(deltaOmega * events));
                maxValue = TMath::Max(maxValue, numEntries/(deltaOmega * events)); //< for calculation of FWHM
                }
        distrib->SetMarkerStyle(2); //filled dot
        distrib->SetMarkerColor(kBlue);
        distrib->Draw("normalized:angle","angle > -3 && angle < 14","p"); //similar axises to e.haettner
        ntuple->SetMarkerStyle(22); //triangle
    ntuple->SetMarkerColor(kRed);
        Float_t zeroPosData; //This is where we store what we norm the experimental data with
        Float_t zeroPosAngle; //okay, so this should be zero, but regrettably is not allways that
        ntuple->SetBranchAddress("y",&zeroPosData);
        ntuple->SetBranchAddress("x",&zeroPosAngle);
        int row = 0;    
        ntuple->GetEntry(row); //Pull the first row, usually is the right one
        while(zeroPosAngle*zeroPosAngle > .01){
                row++;
                ntuple->GetEntry(row);
                if(row == ntuple->GetEntries()){
                        std::cerr << "Could not find zero angle data in imported experimental data. Change normalization or relax exactness of this check." << endl;
                        exit();
                        }
                }
        std::cout << "For zero-position of experimental data using angle " << zeroPosAngle << " with amount " << zeroPosData << " on row " << row << endl;
        TString experimentalNorm = Form("(1/%f)*", zeroPosData);
        ntuple->Draw(experimentalNorm + "y:x","","p,same");

        //Calculate FWHM, ineffective solution. (but works also without normalizing to 1)
        Float_t fwhm = 0.0, middle = 0.0, currentX, currentY;
        distrib->SetBranchAddress("normalized",&currentY);
        distrib->SetBranchAddress("angle",&currentX);
        for(int i = 0; i < distrib->GetEntries(); i++){
                distrib->GetEntry(i);
                if(pow(maxValue/2 - middle, 2.0) > pow(maxValue/2 - currentY, 2.0)){
                                fwhm = 2*currentX;
                                middle = currentY;
                        }else{
                                }
                }
                std::cout << "Calculated (closest point) FWHM of Monte-Carlo simulation to be: " << fwhm << " degrees" << endl; 
        
        /*
         * This code is left here because it allows to calcualte the values without using annuluses
         * this of course is a bit more like the experimental data but statistically less precise.
        for(Double_t p = 0.0;p < 14.0; p = p + 1.0){
        rMinString = "0.00";
        rMaxString = "2.00";
        TString plusY = Form("(posY - %f)", p);
        TString plusZ = Form("(posZ - %f)", p);
                Double_t deltaPhi = TMath::ATan((detectorSideLength/2)/scatteringDistance);
        Double_t normEntries = fragments->GetEntries("(Z == " + Anum + " && energy > 0 && sqrt(" + plusY + "^2 + " + plusZ + "^2) < " + rMaxString + "&& sqrt("+plusY + "^2 + " + plusZ + "^2) > " + rMinString + ")");
        //std::cout << "(Z == " + Anum + " && energy > 0 && sqrt(" + plusY + "^2 + " + plusZ + "^2) < " + rMaxString + "&& sqrt("+plusY + "^2 + " + plusZ + "^2) > " + rMinString + ")";
        Double_t zeroSA = 2*TMath::Pi()*(TMath::Cos(0) - TMath::Cos(deltaPhi));
        std::cout << "with " << p << "cm the amount is " << normEntries << " / " << normEntries /(events*zeroSA) << endl;
                }
                */
        
        
        c1->SaveAs("AD_for_Z_" + Anum + "_ComparedToGM.png");
        in.close();
        f->Write();
}